PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G00350.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 474aa    MW: 51115.1 Da    PI: 6.6765
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G00350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS254.34.6e-781034732374
             GRAS   2 velLlecAeavssgdlelaqalLar..lsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsP 89 
                      ve+L+++A+  ++gd  +a+++Lar  ++ +  ++++ p+ R a yf+ AL++ l +  +  +++ pp + +e +      +l+a+k fs++sP
  OBART03G00350.1 103 VEQLVQAAKLTEAGDVLAARHILARpaINYRlPASAAPPLLRSALYFKDALRRALISDDDDSSSSTPPPPLHEPHphdLLLKLTAYKSFSDLSP 196
                      689*********************85466656777889******************9777777777665555444444899999********** PP

             GRAS  90 ilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefn 179
                      +l f+h+t+ qa+l++++ + +++H +Dfdi+ G QW++L++ La R  +   l++T+++  +s+   +  +l+ +++ L+ fA+ l vpf+f 
  OBART03G00350.1 197 LLHFAHFTCVQAVLDELAPSaSCIHLLDFDIGVGEQWASLMHDLAHRH-PGVALKVTALNVTASSsshHPLQLQLIHDTLSTFAADLSVPFRFA 289
                      ****************9988799************************6.44799***998876666668899********************** PP

             GRAS 180 vlvakrledleleeL.rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                      ++   +l++ +l  L +v    +a+aV+l +   +      +     ++vL+lv++l +k+vv v++ +d+++ +F++++l+al+  ++l++sl
  OBART03G00350.1 290 AF---NLDATDLTPLlAVAAaTDAIAVHLPVGSVHAT----A----VPSVLHLVRRLGAKLVVSVDRGCDRGELPFAAHLLQALRSTVSLLESL 372
                      *7...5555555554255557*********9888887....4....456********************************************* PP

             GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                      +a  +++s+ ++k+Er++++++i+++v ++      +++ ++ Wr+ l +aGF pv++s+ a++qa++ll+k +++g+r+e + gsl+l W++ 
  OBART03G00350.1 373 DAM-GTDSDVAAKIERFWVQPKIQECVRAAVGV-GGDKTAASAWRATLASAGFVPVQVSSMAEAQAESLLKKLPVRGFRLERRAGSLFLHWQRG 464
                      998.99*********************988776.6888899***************************************************** PP

             GRAS 366 pLvsvSaWr 374
                      +L svSaWr
  OBART03G00350.1 465 ELASVSAWR 473
                      ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.33976453IPR005202Transcription factor GRAS
PfamPF035141.6E-75103473IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MALAASSSSF TLTSPGLRPP THAASTPPPP PWLDDADHHH DNTFLHWVIN DHHHPLLDLD  60
DVDLDYAKPA PFFFADRGLH HHHPASSSFP NPKPTADDNT STVEQLVQAA KLTEAGDVLA  120
ARHILARPAI NYRLPASAAP PLLRSALYFK DALRRALISD DDDSSSSTPP PPLHEPHPHD  180
LLLKLTAYKS FSDLSPLLHF AHFTCVQAVL DELAPSASCI HLLDFDIGVG EQWASLMHDL  240
AHRHPGVALK VTALNVTASS SSHHPLQLQL IHDTLSTFAA DLSVPFRFAA FNLDATDLTP  300
LLAVAAATDA IAVHLPVGSV HATAVPSVLH LVRRLGAKLV VSVDRGCDRG ELPFAAHLLQ  360
ALRSTVSLLE SLDAMGTDSD VAAKIERFWV QPKIQECVRA AVGVGGDKTA ASAWRATLAS  420
AGFVPVQVSS MAEAQAESLL KKLPVRGFRL ERRAGSLFLH WQRGELASVS AWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-2513847336375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139080.0AC213908.1 Oryza glaberrima clone OG_BBa0062I05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629082.20.0scarecrow-like protein 6
TrEMBLA0A0D3FCN70.0A0A0D3FCN7_9ORYZ; Uncharacterized protein
STRINGOBART03G00350.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.13e-57GRAS family protein