PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G00960.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 1801aa    MW: 198261 Da    PI: 5.3546
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G00960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-0617811801526
                       --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                       +C+ f+++G+C+ G++C++ H+
  OBART03G00960.1 1781 ICK-FHENGYCRKGASCNYLHP 1801
                       799.9999*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.106.0E-9110168IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579035.76E-8110161IPR011011Zinc finger, FYVE/PHD-type
CDDcd155681.13E-19116161No hitNo description
SMARTSM002491.6E-6116162IPR001965Zinc finger, PHD-type
PROSITE patternPS013590117177IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001512.7E-5341429IPR019835SWIB domain
SuperFamilySSF475927.19E-22347426IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.101.1E-26348431IPR003121SWIB/MDM2 domain
PfamPF022011.1E-16351424IPR003121SWIB/MDM2 domain
SuperFamilySSF1590424.32E-34485610IPR004343Plus-3 domain
SMARTSM007191.6E-43485594IPR004343Plus-3 domain
PROSITE profilePS5136031.898485617IPR004343Plus-3 domain
PfamPF031262.4E-25490593IPR004343Plus-3 domain
SuperFamilySSF552771.44E-15766832IPR003169GYF domain
PROSITE profilePS5082914.522779831IPR003169GYF domain
SMARTSM004442.0E-13780833IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.4E-14781832IPR003169GYF domain
PfamPF022133.6E-9782821IPR003169GYF domain
PROSITE profilePS5010314.12617761801IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.01E-517781800IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1801 aa     Download sequence    Send to blast
MEGAAAAGGG GEMLSPGEAD WPPELRLPPP PPPPAASEGE PPPARAAVGM DDSQFLGSII  60
GLPAQPPQAT AEALAVVGVK RRRGRPPKKR DGAAAATAVV PAARPARRRE DEEEVVCFIC  120
FDGGNLVVCD RRGCPKVYHP ACIKRDEAFF QSRSKWNCGW HICSSCEKAV HYMCYTCTYS  180
LCKVCIKQGK FFSVRGTKGF CDTCYSTILL IESKDEGDTK IVVDFDDQNS WEYLFKLYWV  240
DLKGKLSLTL EELTSAKARW NAPTTYTRKE KDESSDDLYD ANNDDDAGSD CSSGKRKRNS  300
SRKKGRKRRK PNSDCSIATK KVETVTRDDG TLPNKVPTEE ASLPVDTKWA SPELLEFVGH  360
MRDGDQSFIS QFDVQALLLD YIKQNNLRDP QRKSQIICDS RLHRLFRKTR VAHFEMLKLL  420
EMHFIVSEPS AVNDGSQGII NPDSAQIDHA SGYNDMAAKF SPDRRRRMHR KMEREPQANP  480
EDYAAIDMHN INLIYLRRSL MEDLIDDPTL SDKISGAFVR IRISGLGQKQ DMYRLVKVVG  540
THKVSEKYSI GKKMTNFALE IMNLNKKEII TMDTVSNQDF TEEECKRLRQ SMKYDLISRL  600
KVGDIQEKAK IFQFVRVNDW FENEKQKLCH LRDRASETGQ CVEKLQLLNT PEERARRINE  660
VLDVHVDSHM DPDYESDDEF GNKKAVERSV NWARSDPFVS PVKVKYSNSS QKNGDATRHL  720
KNLSKQNTER KSGAARNFEN SHSPVGMDIP KSGTNVKSTR CETTSPSSHG VVSSDMEPEK  780
VWHYKDPSGN VQGPFTLVQL SKWTSYFPRD MRVWLTFESE ERSLLLTEVL SKQPKDFGQP  840
ASVTTSSKST VADTGQNRNT EIVDLNKAPS PVGYSMLNSF ETTVQSTKHS APERESVNSL  900
DDRLSHSTDS VPPKDANASN SQAMCQIKHS GSLPSPGSPH QRSDLHHDEV QGGRSGEWNN  960
QHNSELWSPS MPQTSSSAHS NVESHHDHYP SWSQVQHDPK NSLQAGSGKD LNSRYDIAQK  1020
LPSQRITRDV PSPVFAWSPS ESRTASSQHE GSCLSSTTNL CTHDELHSSI ASAKAKSFAP  1080
ATPVEDRGSS SPSGMLSLSE RAPICSPQSA PSASASDTCK MEENMNQQKT LEADISNTSV  1140
NQSPESKILP ESSPDNQDAE HEYRSPPPIS ESKELSPQSR TTPGSSPDNQ DTEREYPSPP  1200
PISGSKEISP QSRTILESSP DNQDNGHEYP SPPPIPESIE LSPHSKALPE SSPDNQDIEP  1260
ECSSPPQIPE SKELSRQSKI LPESSPGKQD IEPECPSPPQ IPESKELSQQ SKILPESSPD  1320
NHDIKCEYSS PTPIPESKEL SLQSKILPES SSDNQDIKCE DPSPTPISKS KEVSPQSKIL  1380
SESYLDNQDV ERECPSSILI TESKELAVDL PGSISLAPEK TASTDVGENS SLAFIFPKST  1440
LAGDDALKSV FDMAKAHLEC EDSKVKEELY VESTVVIRDD MVVNPASGVE SIDMSENLLE  1500
SLMEQSCGTF YMDGTTALEG FLSGSTKEEP QCSSPIALST CSSPIALSPW GEHGYYQGDS  1560
VGSSLWGVQD DDPIGNIWPL SSQAPALQYS SGSTAHFIDE ATVTHGNNGV VLSSTPGEEV  1620
GLPNSGVCTD WGLVEQVNPE ANDASVSMID KNSGLVDSQP SANDGSDVGT ARNTNHNTNL  1680
SLNHETAVPL SRSSGEASRK HGFITDLNVA TSEEALGNTK NWNPSAGNAN RGSQRNHHRD  1740
RYSQISESWL LSSNYSRSRS DGFGTGGSSR STPRGQTQRG ICKFHENGYC RKGASCNYLH  1800
P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295309RKRNSSRKKGRKRRK
2295310RKRNSSRKKGRKRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2104920.0AC210492.2 Oryza glaberrima clone OG_BBa0088K24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630500.10.0zinc finger CCCH domain-containing protein 20 isoform X2
TrEMBLA0A0D3FCW70.0A0A0D3FCW7_9ORYZ; Uncharacterized protein
STRINGOBART03G00960.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27091822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0nucleic acid binding;zinc ion binding;DNA binding