PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G00960.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 1774aa    MW: 195003 Da    PI: 5.3175
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G00960.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.7e-0617541774526
                       --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                       +C+ f+++G+C+ G++C++ H+
  OBART03G00960.2 1754 ICK-FHENGYCRKGASCNYLHP 1774
                       799.9999*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.108.8E-9110169IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579035.54E-8110161IPR011011Zinc finger, FYVE/PHD-type
CDDcd155681.11E-19116161No hitNo description
SMARTSM002491.6E-6116162IPR001965Zinc finger, PHD-type
PROSITE patternPS013590117177IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001512.7E-5341429IPR019835SWIB domain
SuperFamilySSF475926.98E-22347426IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.101.1E-26348431IPR003121SWIB/MDM2 domain
PfamPF022011.1E-16351424IPR003121SWIB/MDM2 domain
SMARTSM007191.6E-43485594IPR004343Plus-3 domain
PROSITE profilePS5136031.898485617IPR004343Plus-3 domain
SuperFamilySSF1590424.18E-34485610IPR004343Plus-3 domain
PfamPF031262.4E-25490593IPR004343Plus-3 domain
SuperFamilySSF552771.44E-15739805IPR003169GYF domain
PROSITE profilePS5082914.522752804IPR003169GYF domain
SMARTSM004442.0E-13753806IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.4E-14754805IPR003169GYF domain
PfamPF022133.5E-9755794IPR003169GYF domain
PROSITE profilePS5010314.12617491774IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-517511773IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1774 aa     Download sequence    Send to blast
MEGAAAAGGG GEMLSPGEAD WPPELRLPPP PPPPAASEGE PPPARAAVGM DDSQFLGSII  60
GLPAQPPQAT AEALAVVGVK RRRGRPPKKR DGAAAATAVV PAARPARRRE DEEEVVCFIC  120
FDGGNLVVCD RRGCPKVYHP ACIKRDEAFF QSRSKWNCGW HICSSCEKAV HYMCYTCTYS  180
LCKVCIKQGK FFSVRGTKGF CDTCYSTILL IESKDEGDTK IVVDFDDQNS WEYLFKLYWV  240
DLKGKLSLTL EELTSAKARW NAPTTYTRKE KDESSDDLYD ANNDDDAGSD CSSGKRKRNS  300
SRKKGRKRRK PNSDCSIATK KVETVTRDDG TLPNKVPTEE ASLPVDTKWA SPELLEFVGH  360
MRDGDQSFIS QFDVQALLLD YIKQNNLRDP QRKSQIICDS RLHRLFRKTR VAHFEMLKLL  420
EMHFIVSEPS AVNDGSQGII NPDSAQIDHA SGYNDMAAKF SPDRRRRMHR KMEREPQANP  480
EDYAAIDMHN INLIYLRRSL MEDLIDDPTL SDKISGAFVR IRISGLGQKQ DMYRLVKVVG  540
THKVSEKYSI GKKMTNFALE IMNLNKKEII TMDTVSNQDF TEEECKRLRQ SMKYDLISRL  600
KVGDIQEKAK IFQFVRVNDL LNTPEERARR INEVLDVHVD SHMDPDYESD DEFGNKKAVE  660
RSVNWARSDP FVSPVKVKYS NSSQKNGDAT RHLKNLSKQN TERKSGAARN FENSHSPVGM  720
DIPKSGTNVK STRCETTSPS SHGVVSSDME PEKVWHYKDP SGNVQGPFTL VQLSKWTSYF  780
PRDMRVWLTF ESEERSLLLT EVLSKQPKDF GQPASVTTSS KSTVADTGQN RNTEIVDLNK  840
APSPVGYSML NSFETTVQST KHSAPERESV NSLDDRLSHS TDSVPPKDAN ASNSQAMCQI  900
KHSGSLPSPG SPHQRSDLHH DEVQGGRSGE WNNQHNSELW SPSMPQTSSS AHSNVESHHD  960
HYPSWSQVQH DPKNSLQAGS GKDLNSRYDI AQKLPSQRIT RDVPSPVFAW SPSESRTASS  1020
QHEGSCLSST TNLCTHDELH SSIASAKAKS FAPATPVEDR GSSSPSGMLS LSERAPICSP  1080
QSAPSASASD TCKMEENMNQ QKTLEADISN TSVNQSPESK ILPESSPDNQ DAEHEYRSPP  1140
PISESKELSP QSRTTPGSSP DNQDTEREYP SPPPISGSKE ISPQSRTILE SSPDNQDNGH  1200
EYPSPPPIPE SIELSPHSKA LPESSPDNQD IEPECSSPPQ IPESKELSRQ SKILPESSPG  1260
KQDIEPECPS PPQIPESKEL SQQSKILPES SPDNHDIKCE YSSPTPIPES KELSLQSKIL  1320
PESSSDNQDI KCEDPSPTPI SKSKEVSPQS KILSESYLDN QDVERECPSS ILITESKELA  1380
VDLPGSISLA PEKTASTDVG ENSSLAFIFP KSTLAGDDAL KSVFDMAKAH LECEDSKVKE  1440
ELYVESTVVI RDDMVVNPAS GVESIDMSEN LLESLMEQSC GTFYMDGTTA LEGFLSGSTK  1500
EEPQCSSPIA LSTCSSPIAL SPWGEHGYYQ GDSVGSSLWG VQDDDPIGNI WPLSSQAPAL  1560
QYSSGSTAHF IDEATVTHGN NGVVLSSTPG EEVGLPNSGV CTDWGLVEQV NPEANDASVS  1620
MIDKNSGLVD SQPSANDGSD VGTARNTNHN TNLSLNHETA VPLSRSSGEA SRKHGFITDL  1680
NVATSEEALG NTKNWNPSAG NANRGSQRNH HRDRYSQISE SWLLSSNYSR SRSDGFGTGG  1740
SSRSTPRGQT QRGICKFHEN GYCRKGASCN YLHP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295309RKRNSSRKKGRKRRK
2295310RKRNSSRKKGRKRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2104920.0AC210492.2 Oryza glaberrima clone OG_BBa0088K24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630500.10.0zinc finger CCCH domain-containing protein 20 isoform X2
TrEMBLA0A0D3FCW80.0A0A0D3FCW8_9ORYZ; Uncharacterized protein
STRINGOBART03G00960.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.11e-168nucleic acid binding;zinc ion binding;DNA binding