PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART03G01030.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 288aa MW: 29579 Da PI: 4.2701

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART03G01030.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	74.2	2.1e-23	62	119	1	58
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenln 58 rW++qe+laL+++r+em+ ++r+++lk+plWeevs+k++e g++rs+k+C+ek+en+ OBART03G01030.1 62 RWPRQETLALLKIRSEMDAAFREAALKGPLWEEVSRKLAEMGYNRSAKKCREKFENVD 119 8*******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0016	59	121	IPR001005	SANT/Myb domain
Pfam	PF13837	1.5E-14	61	119	No hit	No description
CDD	cd12203	7.14E-28	61	118	No hit	No description
PROSITE profile	PS50090	6.992	61	119	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MPPFSAAGSE GAPSPISSRP PPPEQAAAAA AAEEQLNGSS LEHDGVLGGE EGDRGGSPAG 60 NRWPRQETLA LLKIRSEMDA AFREAALKGP LWEEVSRKLA EMGYNRSAKK CREKFENVDN 120 NGNGNGWASA NNGGGGSSSG GMQTKASNNG TATAGGLPVV SVAGGNGNGV AATTDNKGSK 180 QVPVAKETAG QRQPQPLAMN HNYGNDRMAD DMDSDSMDDD DDDDEFDDDD DIGGGKMQVQ 240 YEIQRPQLQN QNVVVGRPNA SGGGAPTTPA GPPPPAATSG TSFLACVQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241800	0.0	AK241800.1 Oryza sativa Japonica Group cDNA, clone: J065208I24, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628078.1	2e-50	trihelix transcription factor GTL1
TrEMBL	A0A0D3FCX5	0.0	A0A0D3FCX5_9ORYZ; Uncharacterized protein
STRING	OBART03G01030.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15223	12	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-26	Trihelix family protein