PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART03G01740.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 185aa MW: 19628.4 Da PI: 7.1111

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART03G01740.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.9	1.8e-13	2	50	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ++Er+RR+ +N+ ++ Lr+l+P++ + ++ + a+++ A++Y+k+L+ OBART03G01740.1 2 THIAVERNRRRLMNDHLASLRSLIPSN---YIPRGDQATVVGGAIDYVKQLE 50 8************************...9*****************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.424	1	49	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.07E-14	1	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.27E-12	1	50	No hit	No description
Pfam	PF00010	1.1E-10	2	50	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-12	2	53	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-10	4	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MTHIAVERNR RRLMNDHLAS LRSLIPSNYI PRGDQATVVG GAIDYVKQLE QQLVALQAAA 60 AERSGVGVVA TAATAASDGV FVSPQYTSYS EARGGSGVDV EATAAVGGHV RVRVAGRRWT 120 GRLLRAVAAM EDLRLTVLHL AVTSVGHDAV VYCFNLKMEE GCEMATADEV ATVVHQIFAY 180 AGACC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC210491	0.0	AC210491.1 Oryza glaberrima clone OG_BBa0088K23, complete sequence.
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629439.2	1e-129	transcription factor bHLH57
TrEMBL	A0A0D3FD53	1e-131	A0A0D3FD53_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9Z1C8	1e-129	A0A0D9Z1C8_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0GB93	1e-129	A0A0E0GB93_ORYNI; Uncharacterized protein
STRING	OGLUM03G01710.1	1e-130	(Oryza glumipatula)
STRING	ONIVA02G30660.1	1e-130	(Oryza nivara)
STRING	OBART03G01740.1	1e-131	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7957	33	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	2e-38	bHLH family protein