PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G01840.3
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 196aa    MW: 22831.9 Da    PI: 6.6856
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G01840.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.44.8e-081361791454
                      HHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  14 eLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +L++  +   k +yp+++++++L +++gL+ +q+ +WF N+R +
  OBART03G01840.3 136 ILKQWWQqhsKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 179
                      5555555222469*****************************87 PP
2ELK26.21.8e-09100121122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK +L++++++++ ++++E++
  OBART03G01840.3 100 ELKIELKQGFKSRIEDVREEIL 121
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012562.4E-11343IPR005541KNOX2
PfamPF037913.5E-12342IPR005541KNOX2
PROSITE profilePS512139.132100120IPR005539ELK domain
PROSITE profilePS5007111.693120183IPR001356Homeobox domain
SuperFamilySSF466892.48E-16122187IPR009057Homeodomain-like
SMARTSM003894.9E-10122187IPR001356Homeobox domain
CDDcd000867.18E-11123184No hitNo description
Gene3DG3DSA:1.10.10.602.0E-25127186IPR009057Homeodomain-like
PfamPF059205.2E-18140179IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MQAQYMMLLC SFREQLQQHV RVHAVEAVMA CREIEQSLQD LTGATLEEGT GATMSEDEDE  60
TAPMLEGPMD MGSDGHDLMG FGPLMPTDSE RSLMERVRQE LKIELKQGFK SRIEDVREEI  120
LRKRRAGKLP GDTTTILKQW WQQHSKWPYP TEDDKAKLVE ETGLQLKQIN NWFINQRKRN  180
WHNNSQTSTL KSKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176195RKRNWHNNSQTSTLKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076290.0AB007629.1 Oryza sativa Japonica Group HOS66 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628919.11e-143homeobox protein knotted-1-like 3
SwissprotQ94LW31e-145KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLA0A0D3FD671e-144A0A0D3FD67_9ORYZ; Uncharacterized protein
TrEMBLB8ALY81e-142B8ALY8_ORYSI; Uncharacterized protein
STRINGORUFI03G01570.21e-143(Oryza rufipogon)
STRINGOS03T0123500-021e-143(Oryza sativa)
STRINGONIVA03G01480.21e-143(Oryza nivara)
STRINGORGLA03G0016000.11e-143(Oryza glaberrima)
STRINGOBART03G01840.31e-145(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-107KNOTTED-like homeobox of Arabidopsis thaliana 7