PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G01840.4
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 143aa    MW: 16896.1 Da    PI: 9.6029
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G01840.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.93.6e-08831261454
                      HHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  14 eLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +L++  +   k +yp+++++++L +++gL+ +q+ +WF N+R +
  OBART03G01840.4  83 ILKQWWQqhsKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 126
                      5555555222469*****************************87 PP
2ELK26.91.1e-094768122
              ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                     ELK +L++++++++ ++++E++
  OBART03G01840.4 47 ELKIELKQGFKSRIEDVREEIL 68
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512139.1324767IPR005539ELK domain
PROSITE profilePS5007111.69367130IPR001356Homeobox domain
SuperFamilySSF466891.2E-1669134IPR009057Homeodomain-like
SMARTSM003894.9E-1069134IPR001356Homeobox domain
CDDcd000861.93E-1070131No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2574133IPR009057Homeodomain-like
PfamPF059203.0E-1887126IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MSEDEDETAP MLEGPMDMGS DGHDLMGFGP LMPTDSERSL MERVRQELKI ELKQGFKSRI  60
EDVREEILRK RRAGKLPGDT TTILKQWWQQ HSKWPYPTED DKAKLVEETG LQLKQINNWF  120
INQRKRNWHN NSQTSTLKSK RKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-1370126864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123142RKRNWHNNSQTSTLKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076290.0AB007629.1 Oryza sativa Japonica Group HOS66 mRNA, partial cds.
GenBankAB0618190.0AB061819.1 Oryza sativa Japonica Group HOS66 mRNA for KNOX family class 2 homeodomain protein, complete cds.
GenBankAK0603160.0AK060316.1 Oryza sativa Japonica Group cDNA clone:001-007-E04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628919.11e-103homeobox protein knotted-1-like 3
SwissprotQ94LW31e-104KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLB8ALY81e-102B8ALY8_ORYSI; Uncharacterized protein
STRINGORUFI03G01570.21e-103(Oryza rufipogon)
STRINGOS03T0123500-021e-103(Oryza sativa)
STRINGONIVA03G01480.21e-102(Oryza nivara)
STRINGORGLA03G0016000.11e-103(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.12e-83KNOTTED-like homeobox of Arabidopsis thaliana 7