PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G03300.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 165aa    MW: 19209.5 Da    PI: 5.9902
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G03300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.2e-107302347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                      W++Iar+++ gRt++++k++w+++
  OBART03G03300.1  7 KWSAIARCLP-GRTDNEIKNYWRTH 30
                     4*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.344135IPR017930Myb domain
SuperFamilySSF466891.79E-7634IPR009057Homeodomain-like
CDDcd001676.58E-7631No hitNo description
Gene3DG3DSA:1.10.10.601.1E-11631IPR009057Homeodomain-like
PfamPF002495.5E-7730IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MCTVIKKWSA IARCLPGRTD NEIKNYWRTH FKKARPSRRA RAQLLHQYQL QQQQQHRQYL  60
HSLNLLQQQQ QQLQQQHQQQ QQQMMLLQEQ EQQSPQEEAA DDSMVMMMMN DLQSKERCCT  120
AVSVVPDDCV LPADDDAIWD SLWRLVDGDG SCGEGSSGGE YWATS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1221490.0AC122149.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0083D24, complete sequence.
GenBankAC1376970.0AC137697.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0081A17, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630196.11e-111transcription factor WER
TrEMBLA0A0D3FDN21e-117A0A0D3FDN2_9ORYZ; Uncharacterized protein
STRINGOBART03G03300.11e-118(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132282433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.14e-12myb domain protein 121