PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G03980.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1478aa    MW: 161818 Da    PI: 5.9333
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G03980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-0513681393123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                       ++C    C+++F +k +L+ H+r+ +
  OBART03G03980.1 1368 FQCDieFCDMTFETKAELRAHQRNiC 1393
                       899999*****************877 PP
2zf-C2H212.60.0004313931415323
                       ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                       C+   Cgk+Fs++ +LkrH+ +H
  OBART03G03980.1 1393 CTdeSCGKRFSSHKYLKRHQCVH 1415
                       77778***************998 PP
3zf-C2H213.70.0001914511477123
                       EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                       ykC+  dCg+sF+  s++ rH ++  H
  OBART03G03980.1 1451 YKCSapDCGQSFRYVSDYSRHRKKfnH 1477
                       99********************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005459.1E-132970IPR003349JmjN domain
PROSITE profilePS5118313.6053071IPR003349JmjN domain
PfamPF023754.3E-133164IPR003349JmjN domain
SuperFamilySSF511971.92E-28213395No hitNo description
SMARTSM005588.5E-49230399IPR003347JmjC domain
PROSITE profilePS5118434.774233399IPR003347JmjC domain
PfamPF023733.1E-37263382IPR003347JmjC domain
Gene3DG3DSA:3.30.160.602.1E-413621390IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.53813681390IPR007087Zinc finger, C2H2
SMARTSM003551213681390IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.00613911420IPR007087Zinc finger, C2H2
SMARTSM003552.313911415IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013931415IPR007087Zinc finger, C2H2
SuperFamilySSF576671.4E-613931427No hitNo description
Gene3DG3DSA:3.30.160.604.9E-713971421IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.01E-1014151471No hitNo description
PROSITE profilePS5015711.96714211450IPR007087Zinc finger, C2H2
SMARTSM003556.6E-414211445IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.9E-1114221445IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014231445IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-1014461473IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.36514511478IPR007087Zinc finger, C2H2
SMARTSM003550.1414511477IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014531477IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1478 aa     Download sequence    Send to blast
MPPQPPPAAS ASASAPDPAV PAWLRGLPRA PEYRPTESEF ADPIAFLSRV EREAAAYGIC  60
KVIPPHPRPS RRFVFAHLNR SLVSSCDAPA PSPAAASDSS IPPSSSSSPP PASAAVFTTR  120
HQELGNPRRG RPTPQVLKQV WQSGERYTLD QFESKSRAFS KTHLAGLHEP TALAVESLFW  180
KASADRPIYI EYANDVPGSG FAAPVQLQRK KKQKRETAPM DEWEKSSGWR LSNSPWNLQA  240
IARAPGSLTR FMPDDVPGVT SPMVYIGMLF SWFAWHVEDH DLHSLNFLHT GAPKTWYAVP  300
GDRAVELEEV IRVHGYGGNT DRIASLAVLG EKTTLMSPEV LIDNGVPCCR LVQYPGEFVV  360
TFPRAYHVGF SHGFNCGEAA NFATPQWLKF AKEAAVRRAV MNYLPMLSHQ QLLNPRELLS  420
GIRTSRLRDR KKEDRELLVK QEFLQDMISE NELICSFLGK KSVDNVVLWE PDLLPSLTAL  480
HPCSSCSKAP EKKGEDGPRI GSTQSSSKDD SSSDGTACMT GTQSKGLSMD SKQAPEGEKL  540
DTDDGDDLPF DLSIDSGSLT CVACGILGYP FMAILQPSRK ALEEISLVDK ERYKLSCEKE  600
ICSNVLPCSP NDGSSGCPLI ANRSSSPVEN ANLSHQDVKP IRSDISLMGK EFNGTLGKHI  660
GTSCSCSSEN TIHPYGDTET PEKKIPSDCP GSELSKQSGR GDVNVPDVEG SEETISWNTG  720
CAFARPRIFC LQHALEIEEL LASKGGVHAL IICHADYVKL KALAISIAEE IEFQFDYKDV  780
ALANASKSNL HLINISIDDE GYEEEGTDWT SRMGLNLKHS SKIRKETSES QEQPPLSFWG  840
LFSKPSPISV VSNLKWLCRK ARTPYKVIGY ASSPDVVATP DKVKPAVTKT QIDTSGNAHE  900
NIGSEQTLQQ DCVLQESNDV ADMCKRRKVN DQDGHSLINI PIAVAEYPMM HQVCERPVSV  960
SACDDPICSF DSQDSPTTVA VSAGKPTREQ CGAESTELST VQQFLDNGLI AEGGSMNFIS  1020
NHEHLESDNA TSVCKDEQLQ VQQDQLAMVL CNNPNTELVA GELHGGAASS TLENEDSCGN  1080
TSYCSDTVLK NSKPDTDDQP ETCDRSVVLV TPKSSCDQMI SSSDRSCSLT LDCPVSTDAA  1140
FSSEKLSMAH DLMGSELQAV HNSKAEVAAS LTDVKGAKLN SIHTAQLPHE SPSSDFIISE  1200
GAQSASATAI PRKNGTSMHT ESNSIDILLG VLADESKVSS GKDEVGKASL TLMTLAGNDQ  1260
SADDVTQDEV AEITDPSHGF CASDIVSRSI GSSNRTNIIC YARRKHKRKS GSEFNINSPQ  1320
SLGSFVRSPC ESLRPRTRPA IVEDMTNETK TAEASTANKR KKAKVEAFQC DIEFCDMTFE  1380
TKAELRAHQR NICTDESCGK RFSSHKYLKR HQCVHRDERP FKCPWDGCPM TFKWLWAQTE  1440
HIRVHTGERP YKCSAPDCGQ SFRYVSDYSR HRKKFNHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A3e-74234198352Transcription factor jumonji (Jmj) family protein
6ip4_A3e-74234198352Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207214QRKKKQKR
2208215RKKKQKRE
313021308RRKHKRK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630480.10.0lysine-specific demethylase SE14-like isoform X1
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A0D3FDW80.0A0A0D3FDW8_9ORYZ; Uncharacterized protein
STRINGOBART03G03980.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-179C2H2 family protein