PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G05640.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 401aa    MW: 43237.8 Da    PI: 7.9532
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G05640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.36.7e-12252308155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  OBART03G05640.1 252 SQFRGVTRHRWTGRYEAHLWDnTC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 308
                      789******************333.44555535555.779999**************98 PP
2AP243.29.8e-14353398351
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                      y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ 
  OBART03G05640.1 353 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAI 398
                      9***************988532...5********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-14252318IPR016177DNA-binding domain
CDDcd000184.40E-17252318No hitNo description
PROSITE profilePS5103216.871253316IPR001471AP2/ERF domain
SMARTSM003802.0E-22253322IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-12253317IPR001471AP2/ERF domain
PfamPF008477.3E-9253308IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-13351399IPR016177DNA-binding domain
CDDcd000185.97E-16351398No hitNo description
SMARTSM003802.6E-14352401IPR001471AP2/ERF domain
PROSITE profilePS5103215.672352401IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-13352399IPR001471AP2/ERF domain
PfamPF008471.0E-8353398IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDMNNGWLGF SLSSSSARGY GDGCGEGNGG GDGDGSCSSP VAASPLVAMP LHSDGSVHYD  60
APDWRHAEAK DPKLEDFMSV SYSNKSSSNL YGGSSSSSSC GHADQIKYHH VHDVQAFSTP  120
YFYGHGGSGV GIDINMNAPP AGCTGVLPDH RPPPPQQDHI FLPPHGQYFL GPPNPMAPAP  180
MYNVASGSDV MAPAAASSTD PCRSPASSRG SGRQSAALSL SVPAVPPSEA PLPPAAMPVV  240
RKPAQTFGQR TSQFRGVTRH RWTGRYEAHL WDNTCRKEGQ TRKGRQGGYD KEEKAARAYD  300
LAALKYWGPT THINFPLSTY EKELEEMKHM TRQEFIAHLR RNSSGFSRGA SMYRGVTRHH  360
QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAINT T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851150.0AY685115.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D14 (AP2D14) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629390.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0D3FEI50.0A0A0D3FEI5_9ORYZ; Uncharacterized protein
STRINGOBART03G05640.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-94AP2 family protein