PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G05980.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 94aa    MW: 9868.81 Da    PI: 6.0728
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G05980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA421.2e-133064133
             GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33
                     C  Cg +   Tp++Rrgp+g +tLCnaCG+ ++k 
  OBART03G05980.1 30 CLRCGISAnaTPHMRRGPEGRRTLCNACGIAWAKD 64
                     6667766667**********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.38E-92265No hitNo description
SMARTSM004011.2E-52482IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-112964IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.9E-113064IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MQFEDGGDVH VGAGEGEDGG RVTVDELTRC LRCGISANAT PHMRRGPEGR RTLCNACGIA  60
WAKDTSVSNS HQQALHGGAQ GSQSGFSVDE RTIV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0678073e-99AK067807.1 Oryza sativa Japonica Group cDNA clone:J013120L22, full insert sequence.
GenBankAK1011973e-99AK101197.1 Oryza sativa Japonica Group cDNA clone:J033030K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633159.11e-39protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0D3FEM52e-62A0A0D3FEM5_9ORYZ; Uncharacterized protein
STRINGOBART03G05980.13e-63(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150391318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.32e-12GATA-type zinc finger protein with TIFY domain