PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART03G06210.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 237aa MW: 26568.6 Da PI: 9.7246

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART03G06210.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.9	3.3e-17	137	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k +++s+v + +l lp++f+e++ k + +tl de+ ++++ ++ ++++ l++GW +F+ ++gL +gD vF+l++ ++f +v OBART03G06210.1 137 FVKPMLHSHVVRGFWLGLPRHFCETYLPK--HDAIVTLLDEKDEQFDTNY--LAYKNG--LSGGWAGFALDHGLLDGDATVFQLVKPTTF--KV 222 89**********************422..4568***********..566555..9********************9986666..99 PP EEE-S CS B3 95 kvfrk 99 +++r+ OBART03G06210.1 223 HIIRA 227 99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.0E-20	128	228	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.12E-24	130	227	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.39E-26	135	226	No hit	No description
Pfam	PF02362	1.4E-15	137	227	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.857	137	228	IPR003340	B3 DNA binding domain
SMART	SM01019	8.6E-19	137	228	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MGMGMEKGMT AYEAARERTV EENKRKMEAL NLRHLSAAIA VAPKTPSPMK QKRRRIIEAA 60 VVAPSPPRRS RRLANLPEVK YAEVAPDGAE RMKRSPRKAI DSIYLATRGS ISMEARLEAA 120 RKAEELESQL DPEFPSFVKP MLHSHVVRGF WLGLPRHFCE TYLPKHDAIV TLLDEKDEQF 180 DTNYLAYKNG LSGGWAGFAL DHGLLDGDAT VFQLVKPTTF KVHIIRATVD DGNEVTK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	51	55	KRRRI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK122017	0.0	AK122017.1 Oryza sativa Japonica Group cDNA clone:J033111M07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633231.1	1e-176	B3 domain-containing protein Os03g0184500
Swissprot	Q10QS9	1e-177	Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBL	A0A0D3FEQ2	1e-175	A0A0D3FEQ2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9Z328	1e-175	A0A0D9Z328_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0G2D5	1e-175	A0A0E0G2D5_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0NQP1	1e-175	A0A0E0NQP1_ORYRU; Uncharacterized protein
TrEMBL	I1P8A4	1e-175	I1P8A4_ORYGL; Uncharacterized protein
STRING	OGLUM03G06210.1	1e-176	(Oryza glumipatula)
STRING	ORUFI03G06050.1	1e-176	(Oryza rufipogon)
STRING	OS03T0184500-01	1e-176	(Oryza sativa)
STRING	ONIVA02G06710.1	1e-176	(Oryza nivara)
STRING	ORGLA03G0060000.1	1e-176	(Oryza glaberrima)
STRING	OBART03G06210.1	1e-176	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-48	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]