PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G06570.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1007aa    MW: 112741 Da    PI: 5.8267
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G06570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1141.82e-4420116398
             CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      ke ++rwl+++ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+een +fq
  OBART03G06570.1  20 KEaQRRWLRPTEICEILKNYRSFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEENINFQ 113
                      55599***************************************************************************************** PP

             CG-1  96 rrc 98 
                      rr 
  OBART03G06570.1 114 RRR 116
                      *96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143764.46615142IPR005559CG-1 DNA-binding domain
SMARTSM010762.0E-4918126IPR005559CG-1 DNA-binding domain
PfamPF038595.5E-3821116IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.0E-7418503IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.52E-17420505IPR014756Immunoglobulin E-set
CDDcd001020.00336420507No hitNo description
PfamPF018335.4E-8420495IPR002909IPT domain
SuperFamilySSF484039.48E-17598712IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.3E-18611717IPR020683Ankyrin repeat-containing domain
CDDcd002042.05E-13612710No hitNo description
PROSITE profilePS5029718.059618722IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.763618650IPR002110Ankyrin repeat
PROSITE profilePS500888.843651683IPR002110Ankyrin repeat
SMARTSM002480.013651680IPR002110Ankyrin repeat
SMARTSM002481400690719IPR002110Ankyrin repeat
SuperFamilySSF525404.78E-8822875IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.075824846IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407825854IPR000048IQ motif, EF-hand binding site
PfamPF006120.0033826845IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022847869IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578848872IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4850869IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1007 aa     Download sequence    Send to blast
MAEGRRYAIA PQLDIEQILK EAQRRWLRPT EICEILKNYR SFRIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRRITCT  120
LYLYIIWKSS TGHDDVLQAS HADSPLSQLP SQTTEGESSV SGQASEYDET ESAYLKQNSV  180
QQIFIREEPD TTLSLGCGSM KMEVDLYQGL QATAPNTGFY SHGQDNLPMV LNESDLGTAF  240
NGPNSQIDLS LWIEAMKPDK GTHQIPLYQA PVPSEQSPFT GGPGIESFTF DEVYNNGLSI  300
KDVDGDDTDG ETPWQIPNAS GTFATVDSFQ QNDKTLEEAI NYPLLKTQSS SLSDIIKDGF  360
KKNDSFTRWM SKELAEVDDS QITSSSGVYW NSEEADNIIE ASSSDQYTLG PVLAQDQLFT  420
IVDFSPTWTY AGSKTRVFIK GNFLSSDEVK RLKWSCMFGE FEVPAEIIAD DTLVCHSPSH  480
KPGRVPFYVT CSNRLACSEV REFDFRPQYM DAPSPLGSTN KIYLQKRLDK LLSVEQDEIH  540
TTLSNPTKEI IDLSKKISSL MMNNDDWSEL LKLADDNEPA TDDKQDQFLQ NRIKEKLHIW  600
LLHKVGDGGK GPSVLDEEGQ GVLHLAAALG YDWAIRPTIA AGVNINFRDA HGWTALHWAA  660
FCGRERTVVA LIALGAAPGA VTDPTPSFPS GSTPADLASA NGHKGISGFL AESSLTSHLQ  720
TLNLKEAMRS SAGEISGLPG IVNVADRSAS PLAVEGHQTG SMGDSLGAVR NAAQAAARIY  780
QVFRMQSFQR KQAVQYEDEN GAISDERAMS LLSAKPSKPA QLDPLHAAAT RIQNKFRGWK  840
GRKEFLLIRQ RIVKIQAHVR GHQVRKHYRK IIWSVGIVEK VILRWRRRGA GLRGFRPTEN  900
AVTESTSSSS GNVTQNRPAE NDYDFLQEGR KQTEERLQKA LARVKSMVQY PDARDQYQRI  960
LTVVTKMQES QAMQEKMLEE STEMDEGLLM SEFKELWDDD MPTPGYF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0666510.0AK066651.1 Oryza sativa Japonica Group cDNA clone:J013074G10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631248.10.0calmodulin-binding transcription activator 1 isoform X1
TrEMBLA0A0D3FEU70.0A0A0D3FEU7_9ORYZ; Uncharacterized protein
STRINGOBART03G06570.20.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1