PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G06570.3
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 975aa    MW: 109057 Da    PI: 5.982
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G06570.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1141.81.9e-4420116398
             CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      ke ++rwl+++ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+een +fq
  OBART03G06570.3  20 KEaQRRWLRPTEICEILKNYRSFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEENINFQ 113
                      55599***************************************************************************************** PP

             CG-1  96 rrc 98 
                      rr 
  OBART03G06570.3 114 RRR 116
                      *96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143764.46615142IPR005559CG-1 DNA-binding domain
SMARTSM010765.7E-5218202IPR005559CG-1 DNA-binding domain
PfamPF038595.3E-3821116IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.8E-7386471IPR013783Immunoglobulin-like fold
PfamPF018335.2E-8388463IPR002909IPT domain
CDDcd001020.00324388475No hitNo description
SuperFamilySSF812961.45E-17388473IPR014756Immunoglobulin E-set
SuperFamilySSF484037.0E-17566680IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.2E-18579685IPR020683Ankyrin repeat-containing domain
CDDcd002041.96E-13580678No hitNo description
PROSITE profilePS500888.763586618IPR002110Ankyrin repeat
PROSITE profilePS5029718.059586690IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.843619651IPR002110Ankyrin repeat
SMARTSM002480.013619648IPR002110Ankyrin repeat
SMARTSM002481400658687IPR002110Ankyrin repeat
SuperFamilySSF525404.51E-8790843IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.075792814IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407793822IPR000048IQ motif, EF-hand binding site
PfamPF006120.0031794813IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022815837IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578816840IPR000048IQ motif, EF-hand binding site
PfamPF006121.9E-4818837IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 975 aa     Download sequence    Send to blast
MAEGRRYAIA PQLDIEQILK EAQRRWLRPT EICEILKNYR SFRIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRRITCT  120
LYLYIIWKSS TGHDDVLQAS HADSPLSQLP SQTTEGESSV SGQASEYDET ESGSYQGLQA  180
TAPNTGFYSH GQDNLPMVLN ESDLGTAFNG PNSQIDLSLW IEAMKPDKGT HQIPLYQAPV  240
PSEQSPFTGG PGIESFTFDE VYNNGLSIKD VDGDDTDGET PWQIPNASGT FATVDSFQQN  300
DKTLEEAINY PLLKTQSSSL SDIIKDGFKK NDSFTRWMSK ELAEVDDSQI TSSSGVYWNS  360
EEADNIIEAS SSDQYTLGPV LAQDQLFTIV DFSPTWTYAG SKTRVFIKGN FLSSDEVKRL  420
KWSCMFGEFE VPAEIIADDT LVCHSPSHKP GRVPFYVTCS NRLACSEVRE FDFRPQYMDA  480
PSPLGSTNKI YLQKRLDKLL SVEQDEIHTT LSNPTKEIID LSKKISSLMM NNDDWSELLK  540
LADDNEPATD DKQDQFLQNR IKEKLHIWLL HKVGDGGKGP SVLDEEGQGV LHLAAALGYD  600
WAIRPTIAAG VNINFRDAHG WTALHWAAFC GRERTVVALI ALGAAPGAVT DPTPSFPSGS  660
TPADLASANG HKGISGFLAE SSLTSHLQTL NLKEAMRSSA GEISGLPGIV NVADRSASPL  720
AVEGHQTGSM GDSLGAVRNA AQAAARIYQV FRMQSFQRKQ AVQYEDENGA ISDERAMSLL  780
SAKPSKPAQL DPLHAAATRI QNKFRGWKGR KEFLLIRQRI VKIQAHVRGH QVRKHYRKII  840
WSVGIVEKVI LRWRRRGAGL RGFRPTENAV TESTSSSSGN VTQNRPAEND YDFLQEGRKQ  900
TEERLQKALA RVKSMVQYPD ARDQYQRILT VVTKMQESQA MQEKMLEEST EMDEGLLMSE  960
FKELWDDDMP TPGYF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0666510.0AK066651.1 Oryza sativa Japonica Group cDNA clone:J013074G10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631249.10.0calmodulin-binding transcription activator 1 isoform X2
TrEMBLA0A0D3FEU90.0A0A0D3FEU9_9ORYZ; Uncharacterized protein
STRINGORGLA03G0064000.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1