PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G09400.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 188aa    MW: 20791.6 Da    PI: 10.019
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G09400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-182276256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     rk+ ++tkeq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  OBART03G09400.1 22 RKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 76
                     788899***********************************************98 PP
2HD-ZIP_I/II126.61.1e-4022111191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++e +eLr +l
  OBART03G09400.1  22 RKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELR-AL 111
                      69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-181077IPR009057Homeodomain-like
SuperFamilySSF466893.34E-191179IPR009057Homeodomain-like
PROSITE profilePS5007117.2161878IPR001356Homeobox domain
SMARTSM003892.1E-152082IPR001356Homeobox domain
CDDcd000863.04E-152279No hitNo description
PfamPF000461.2E-152276IPR001356Homeobox domain
PROSITE patternPS0002705376IPR017970Homeobox, conserved site
CDDcd146860.0058471110No hitNo description
SMARTSM003402.7E-2478121IPR003106Leucine zipper, homeobox-associated
PfamPF021833.6E-1178112IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MWAGGVSSTA AGRDDDDDGS TRKKLRLTKE QSALLEDRFR EHSTLNPKQK VALAKQLNLR  60
PRQVEVWFQN RRARTKLKQT EVDCEFLKRC CETLTEENRR LQRELQELRA LKFAPPPPSS  120
AAHQPSPAPP APFYMQLPAA TLTICPSCER VGGPASAAKV AAADGTKAGP GRTTTHHFFN  180
PFTHSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12026TRKKLRL
27078RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1059270.0AC105927.2 Oryza sativa Japonica Group chromosome 3 clone OJ1781E12, complete sequence.
GenBankAC1351570.0AC135157.2 Oryza sativa Japonica Group chromosome 3 clone OJ1017C11, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY5540390.0AY554039.1 Oryza sativa (japonica cultivar-group) Hox19 (hox19) gene, exon 3 and partial cds.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627844.11e-132homeobox-leucine zipper protein HOX19 isoform X2
SwissprotA2XE761e-133HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL41e-133HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A0D3FFT51e-136A0A0D3FFT5_9ORYZ; Uncharacterized protein
STRINGOBART03G09400.11e-136(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.16e-55homeobox from Arabidopsis thaliana