PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G10890.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 451aa    MW: 50363 Da    PI: 8.5426
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G10890.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.82.9e-13285323543
                      SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
           SRF-TF   5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 
                      +k  r   fskR ++i+ KA+EL +LC++ vav+ +s++
  OBART03G10890.2 285 DKKVRDACFSKRHTTIFNKANELAILCGVMVAVVFVSPN 323
                      56778999*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF126564.1E-23373IPR026822Spp2/MOS2, G-patch domain
SMARTSM004431.9E-82470IPR000467G-patch domain
PROSITE profilePS5017412.2882672IPR000467G-patch domain
SMARTSM004322.8E-9274334IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.521274323IPR002100Transcription factor, MADS-box
CDDcd002661.21E-14275335No hitNo description
SuperFamilySSF554559.68E-14275352IPR002100Transcription factor, MADS-box
PfamPF003191.1E-14285331IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MLRRYKEDMA SLPDHRGLDE FRDVPVEGFG AALLAGYGWS EGKGIGRNNK GDTKVVEYDR  60
RAGTQGLGYN PSEADPKKTR AGEWVVGGNK ETQNGNAKKR DRDSRGRTED RDSSSRQKRS  120
GERRAEREVQ EKDRNSRHTK QVKIGGGGGD KMRWLHSDIK VRVVSERLSK KLYLKKGRVL  180
DVVGPTTCDI IMDDQSELVQ GVEQDMLETV LPRTNGLVLL LAGEHKGLCG HLVEKNSEEE  240
TGVVELSNTK DMIRVKYDQI AEYIGDPESL EACTTRKKIE IKCGDKKVRD ACFSKRHTTI  300
FNKANELAIL CGVMVAVVFV SPNANGGIFS FGYPSVSSVA NRFLANAPNN TSVSSSTQSG  360
RDVEIRELER EERELKEHLQ ASTDQNKLLR EAIAARDGEQ LMLLLQSDCS ELGPKGLVAV  420
VRLWFRNSLV GIRLDRLCWL LQQILFGLDW G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1342340.0AC134234.3 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0019J12, complete sequence.
GenBankAC1342400.0AC134240.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0081I10, complete sequence.
GenBankAK0654420.0AK065442.1 Oryza sativa Japonica Group cDNA clone:J013009J14, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631747.10.0protein MOS2
RefseqXP_015631748.10.0protein MOS2
RefseqXP_015631750.10.0protein MOS2
RefseqXP_015631751.10.0protein MOS2
RefseqXP_015631752.10.0protein MOS2
RefseqXP_015631756.10.0protein MOS2
RefseqXP_025879574.10.0protein MOS2
RefseqXP_025879575.10.0protein MOS2
TrEMBLA0A0D3FGB80.0A0A0D3FGB8_9ORYZ; Uncharacterized protein
STRINGOBART03G10890.20.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP643022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-12AGAMOUS-like 62