PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART03G14970.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 295aa MW: 32353.1 Da PI: 9.3279

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART03G14970.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.9	3.8e-16	104	156	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a++k++g+ OBART03G14970.1 104 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDVAALKFRGA 156 57**************988532...5***********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	14.117	4	69	IPR001471	AP2/ERF domain
CDD	cd00018	1.70E-12	13	69	No hit	No description
Pfam	PF00847	3.4E-4	13	61	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.2E-10	13	70	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.9E-9	13	70	IPR001471	AP2/ERF domain
SMART	SM00380	6.8E-10	13	75	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.7E-18	104	164	IPR016177	DNA-binding domain
Pfam	PF00847	2.8E-11	104	155	IPR001471	AP2/ERF domain
CDD	cd00018	1.59E-11	104	165	No hit	No description
PROSITE profile	PS51032	19.48	105	163	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.6E-19	105	163	IPR001471	AP2/ERF domain
SMART	SM00380	1.4E-32	105	169	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.9E-5	106	117	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.9E-5	145	165	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MSPPTNGAIS LAHRWTGRYE AHLWDNTCRR EGQKRKGRQG GYDIEDKAAR AYDLAALKYW 60 GASATTNFPK ESYVKEIEEM QKMSKQELVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA 120 RIGRVAGNKD LYLGTFATEE EAAEAYDVAA LKFRGANAVT NFEPSRYNLE AISQSDLPIS 180 VSGRRHNSSS NSNNPAPEAG GQITLMSSPP ISQQSSSAPP YLLHNLLQFQ PCGPPYAPPP 240 PPPPQALPLP GSYNFAEPVG FYWPYGDGEE QKVQLNSNMV GMASGGFLHL ANAAN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269\|PubMed:12172019}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109839	0.0	AK109839.1 Oryza sativa Japonica Group cDNA clone:002-148-D11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629274.1	1e-161	AP2-like ethylene-responsive transcription factor AIL7
Swissprot	Q6PQQ4	4e-95	BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBL	A0A0D3FHP8	0.0	A0A0D3FHP8_9ORYZ; Uncharacterized protein
STRING	OBART03G14970.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13579	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.2	7e-78	AINTEGUMENTA-like 6

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Horstman A,Willemsen V,Boutilier K,Heidstra R AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks. Trends Plant Sci., 2014. 19(3): p. 146-57 [PMID:24280109] Horstman A, et al. AIL and HDG proteins act antagonistically to control cell proliferation. Development, 2015. 142(3): p. 454-64 [PMID:25564655] Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor. BMC Plant Biol., 2015. 15: p. 121 [PMID:25976599] Lutz KA,Martin C,Khairzada S,Maliga P Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture. Plant Cell Rep., 2015. 34(10): p. 1849-56 [PMID:26156330] Horstman A, et al. The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis. Plant Physiol., 2017. 175(2): p. 848-857 [PMID:28830937] Du Y,Scheres B PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398] Horstman A,Bemer M,Boutilier K A transcriptional view on somatic embryogenesis. Regeneration (Oxf), 2017. 4(4): p. 201-216 [PMID:29299323]