PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G16040.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 708aa    MW: 75492 Da    PI: 6.9021
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G16040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-07233253526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C ++ar G+Ck G++C+F Hg
  OBART03G16040.1 233 PCLYYAR-GFCKNGSTCRFVHG 253
                      8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.3228255IPR000571Zinc finger, CCCH-type
SMARTSM003560.004230254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4232253IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-5233253IPR000571Zinc finger, CCCH-type
CDDcd124582.86E-32361468No hitNo description
SuperFamilySSF549281.84E-8418486IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3301.1E-5418475IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MDAYEATKVV FSRIQALDPD HAAKIMGLLL IQDHGDKEMI RLAFGPEALL HSVMAQARKE  60
LVLLPPPQAA SSSPTVPAAH SPFLLSRQNS GRCPAPSPSS WAQAQPFSRS NSMGNGGAAD  120
EMVGAGEELM SPLNGGGGAA ANAPPFFPRG GDALLDDFEL QEQLAFLHDG AGGVNPGHAL  180
QAFDGAECRS PGPGESGGML PYGLAWANGG PGHRRSASVN ELCLGGDGFG WKPCLYYARG  240
FCKNGSTCRF VHGGLSDDAA MDAATAEQQQ CQDFLLRSKS QRLGPAAFPF TPTGSLPASP  300
SATSKCLSLL LQQQQQHNDN QRAAAAALML AGGDEAHKFM GRPRLDRVDF ASMMNPGSRQ  360
IYLTFPADST FREEDVSNYF RYIMRCCNDA SSFFHGGLGR TRSDWHFCIA VLGNAPRCSI  420
YGPVHDVRIP YQQKRMFGFV TFVYPETVKL ILAKGNPHFI CDARVLVKPY KEKGKVPDKY  480
RKQQQGDFCC MSPTGLDARD PFDFHQLGAR MLQHSNSANE LMLRRKLEEQ QQAADLQQAI  540
DLHSRRLIGL QLLDLKSSAA VHVAETTTMS LPTPITNAFT SGQPGATTIV ESPPSSTGQL  600
MASCGSPSEG KVVNGGNKAD SAGEVTRIAD SDQSGEHNLP DSPFASSTKS TAFSTATAAT  660
AIGSEGDFTT GSSCNIGGSA VGGANPLRPP TLDIPSPRTC FFPMPRNT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029180.0AK102918.1 Oryza sativa Japonica Group cDNA clone:J033114B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632787.10.0zinc finger CCCH domain-containing protein 23
SwissprotQ10LZ90.0C3H23_ORYSJ; Zinc finger CCCH domain-containing protein 23
TrEMBLA0A0D3FI160.0A0A0D3FI16_9ORYZ; Uncharacterized protein
STRINGOBART03G16040.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14331115
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]