PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART03G16510.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 216aa MW: 24049.2 Da PI: 9.5063

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART03G16510.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.3	4.5e-10	21	67	5	51
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l OBART03G16510.1 21 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTL 67 9****************************************988865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-14	17	81	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.599	19	82	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.9E-9	21	65	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.15E-11	21	72	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.3E-9	21	75	No hit	No description
CDD	cd14703	4.12E-21	22	71	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MEAKKAMTPE QLSELAAIDP KRAKRILANR QSAARSKERK ARYITELERK VQTLQTEATT 60 LSAQLTLFQR DTTGLSAENA ELKIRLQAME QQAQLRDALN DALKQELERL KLATGEMTNS 120 NETYSMGLQH VPYNTPFFPL AQHNAARQNC GTQLPPQFQP PRPNVPNHML SHPNGLQDIM 180 QQDPLGRLQG LDISKGPLVV KSESSSISAS ESSSTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK059473	0.0	AK059473.1 Oryza sativa Japonica Group cDNA clone:001-028-E05, full insert sequence.
GenBank	AK070466	0.0	AK070466.1 Oryza sativa Japonica Group cDNA clone:J023052D02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632816.1	1e-154	transcription factor RF2b
Swissprot	Q6S4P4	1e-155	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A0D3FI75	1e-156	A0A0D3FI75_9ORYZ; Uncharacterized protein
STRING	OBART03G16510.1	1e-157	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2683	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	2e-67	basic leucine-zipper 52

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]