PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G24120.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 522aa    MW: 55499.8 Da    PI: 4.9932
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G24120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.7e-1755102148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WTt Ed  lv+ v+q+G g+W+++ r+ g+ R++k+c++rw ++l
  OBART03G24120.1  55 KGPWTTAEDAVLVQHVRQHGEGNWNAVQRMTGLLRCGKSCRLRWTNHL 102
                      79******************************99***********996 PP
2Myb_DNA-binding50.93.7e-16108151146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+++++E++l++++++qlG++ W++ a++++ gRt++++k++w++
  OBART03G24120.1 108 KGSFSPDEELLIAQLHAQLGNK-WARMASHLP-GRTDNEIKNYWNT 151
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.80450102IPR017930Myb domain
SuperFamilySSF466891.95E-2854149IPR009057Homeodomain-like
SMARTSM007179.2E-1454104IPR001005SANT/Myb domain
PfamPF002494.1E-1455102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2156109IPR009057Homeodomain-like
CDDcd001677.61E-1157102No hitNo description
PROSITE profilePS5129422.55103157IPR017930Myb domain
SMARTSM007178.0E-15107155IPR001005SANT/Myb domain
PfamPF002494.2E-15108151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-24110156IPR009057Homeodomain-like
CDDcd001677.84E-11110151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MEEMIKPAPA PASSEKEVVA TAATGERRHE EATAGREEQE EEEEEEEEAP VVLKKGPWTT  60
AEDAVLVQHV RQHGEGNWNA VQRMTGLLRC GKSCRLRWTN HLRPNLKKGS FSPDEELLIA  120
QLHAQLGNKW ARMASHLPGR TDNEIKNYWN TRTKRRQRAG LPVYPPDVQL HLAFAKRCRY  180
DDFSSPLSSP QQSAGSNVLS MDAADAAGAA SSGYTSARPP PLDLAGQLAM GSRPVQLLAA  240
TPFSAPSSPW GKPFARNAQF FQFPHSSPVS PTTPTGPVQV HPVTPELSLG YGLHAGDRAR  300
LPPVSPSPGA RAELPSSQLR PSMAPTTAAA AATGGLVGGA LQDHPNAASL EAMLQELHDA  360
IKIEPPAPPE NRGTEEEEGG GGGNLRGFLH EQIFDKLMPI KSEDFCIVGL HSVLISLQFP  420
GDGKPEVELK DDIETLFDLI IPATFPAAAP EPAAAATAAS AAPNHSSSVS QHSSDDQDHS  480
NGADVVLDLP ILTGGGGGSS EQDDWSLDGA ACQWNNISGG IC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-285315625127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1479620.0AC147962.1 Oryza sativa chromosome 3 BAC OSJNBa0083K01 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629365.10.0transcription factor MYB65
TrEMBLA0A0D3FKQ20.0A0A0D3FKQ2_9ORYZ; Uncharacterized protein
STRINGOBART03G24120.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.24e-66myb domain protein 101