PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G24650.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 208aa    MW: 23354.8 Da    PI: 11.4266
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G24650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS39.67.7e-131371941066
             GRAS  10 eavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalpp 66 
                      e v++  ++ a+ +Larl e+asp+g +pm+ +aayfteALa r++r+++++++  + 
  OBART03G24650.1 137 ELVHALIAQVANYYLARLGEMASPAGpTPMHSVAAYFTEALALRIVRMWPHMFDRSRR 194
                      5566666799******************************************987654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035142.7E-10137194IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MWHAAGKWST LGTRQRGFGW LREVSYRRRK LLIGEHPLDQ KWWGCASAMG IRLRWSRHLL  60
RRRHRPRSGG DIDPTPAAKV WSLDLNQDDA NLRRSFLIGR ADIFPTASMM PPPPPPPEFD  120
ARNGVPAPGQ AEQEAMELVH ALIAQVANYY LARLGEMASP AGPTPMHSVA AYFTEALALR  180
IVRMWPHMFD RSRRVQAGAA GDRSTASA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1355021e-160AC135502.4 Oryza sativa chromosome 3 BAC OSJNBb0085A04 genomic sequence, complete sequence.
GenBankAP0149591e-160AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3FKV91e-149A0A0D3FKV9_9ORYZ; Uncharacterized protein
STRINGOBART03G24650.11e-150(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.19e-13GRAS family protein