PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART03G25200.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 705aa MW: 80489.9 Da PI: 6.4679

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART03G25200.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	334.6	1.9e-102	325	697	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+avs ++++la+ +L+ ++++asp+gd qRla +++ L rl++++s++y+++ +++ + +++ l+++++ ++P+l+ s OBART03G25200.1 325 LRTLLINCAQAVSVSNHSLASDILKIIRHHASPTGDDSQRLALCLAYCLDVRLTGTGSQIYHKFITKRRN---VKDILKVFHVCLSTCPFLRAS 415 6789*******************************************************999998887...9**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 h N++I++ +g+ +vHiiDf+i G+QWp+L+++La+ ++gpp+lRiTg++ pesg + +++g rLa++A+++++pfe++ + ++++ OBART03G25200.1 416 HYFSNRTIVDVSKGKPQVHIIDFGICFGFQWPSLFEELAKIEDGPPKLRITGIELPESGfrPYARSNNIGLRLADYAKTFNIPFEYQHISSNKW 509 ******************************************************999999********************9999 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e+l++e+++++++E+l+Vn++++++ l de+ s++s+r++ L++++ ++Pkv+v + +++ + Fl+rf e +++y +lfd+l++++pr++e OBART03G25200.1 510 EALSPEDFNIEKDEVLIVNCIYRMKDLGDETISINSARSRALNTIRMMKPKVFVQGVLNGSYGVPFFLTRFKEVMYHYNSLFDMLDKNIPRDNE 603 ******************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r+ +Er + + nv+aceg er+er e+++kW+ r +aG+ ++pl+ ++ + + ++rk + + + v+ee+++lvlgWk+r L++ S W+ OBART03G25200.1 604 TRMIIERDIYQYIMLNVIACEGPERIERPESYKKWKVRNLKAGLVQLPLNPAIVRETQDMVRKGYHKDFLVDEEDQWLVLGWKGRILYASSTWQ 697 ****999999**********************************************9888***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.382	299	677	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.4E-100	325	697	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence Send to blast
MGSDDNKRFD DFHVITNGPG SDAYSNEESI NLDSYIAPST SFCSKIYNPQ LYVEKGNGTT 60 DWCQISGGDY PEKSSINSDI TLSYIDKILM QEDIDDRGNE DTALQAMEEP FYELLGEKYP 120 AFPQQQPLCV CDHLQNFSAN TDKSNGHACN TWSVTRMTNI SSSMNSNGNF QGFQFPWSLS 180 SITRETEQFT HHSNRMVVGL KVDGLSISEK PSQDNCSLQI DAHYMRKHPL FEVHGRKSYP 240 CIEDLDLLEG RSNKQYAIYY DEPIRDEMFD NVLLCSDHKP LDEGVSLSRA MTNNSSKSSQ 300 IGQGKTSARR KTTGKRIQKR DVVDLRTLLI NCAQAVSVSN HSLASDILKI IRHHASPTGD 360 DSQRLALCLA YCLDVRLTGT GSQIYHKFIT KRRNVKDILK VFHVCLSTCP FLRASHYFSN 420 RTIVDVSKGK PQVHIIDFGI CFGFQWPSLF EELAKIEDGP PKLRITGIEL PESGFRPYAR 480 SNNIGLRLAD YAKTFNIPFE YQHISSNKWE ALSPEDFNIE KDEVLIVNCI YRMKDLGDET 540 ISINSARSRA LNTIRMMKPK VFVQGVLNGS YGVPFFLTRF KEVMYHYNSL FDMLDKNIPR 600 DNETRMIIER DIYQYIMLNV IACEGPERIE RPESYKKWKV RNLKAGLVQL PLNPAIVRET 660 QDMVRKGYHK DFLVDEEDQW LVLGWKGRIL YASSTWQPND SGDSD

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence Send to blast

MGSDDNKRFD DFHVITNGPG SDAYSNEESI NLDSYIAPST SFCSKIYNPQ LYVEKGNGTT  60
DWCQISGGDY PEKSSINSDI TLSYIDKILM QEDIDDRGNE DTALQAMEEP FYELLGEKYP  120
AFPQQQPLCV CDHLQNFSAN TDKSNGHACN TWSVTRMTNI SSSMNSNGNF QGFQFPWSLS  180
SITRETEQFT HHSNRMVVGL KVDGLSISEK PSQDNCSLQI DAHYMRKHPL FEVHGRKSYP  240
CIEDLDLLEG RSNKQYAIYY DEPIRDEMFD NVLLCSDHKP LDEGVSLSRA MTNNSSKSSQ  300
IGQGKTSARR KTTGKRIQKR DVVDLRTLLI NCAQAVSVSN HSLASDILKI IRHHASPTGD  360
DSQRLALCLA YCLDVRLTGT GSQIYHKFIT KRRNVKDILK VFHVCLSTCP FLRASHYFSN  420
RTIVDVSKGK PQVHIIDFGI CFGFQWPSLF EELAKIEDGP PKLRITGIEL PESGFRPYAR  480
SNNIGLRLAD YAKTFNIPFE YQHISSNKWE ALSPEDFNIE KDEVLIVNCI YRMKDLGDET  540
ISINSARSRA LNTIRMMKPK VFVQGVLNGS YGVPFFLTRF KEVMYHYNSL FDMLDKNIPR  600
DNETRMIIER DIYQYIMLNV IACEGPERIE RPESYKKWKV RNLKAGLVQL PLNPAIVRET  660
QDMVRKGYHK DFLVDEEDQW LVLGWKGRIL YASSTWQPND SGDSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-40	329	697	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630113.1	0.0	scarecrow-like protein 14
TrEMBL	A0A0D3FL13	0.0	A0A0D3FL13_9ORYZ; Uncharacterized protein
STRING	OBART03G25200.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11788	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-146	GRAS family protein