PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G26340.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 173aa    MW: 19924.1 Da    PI: 10.2427
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G26340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.31.5e-14911721599
                      -EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                       + ++kk+a+ +       e+ t++l + +g+sW+v+++ +k+ ++ +l+ GW++F+ +n+L  gD+++F l ++ ++  + v+++r+
  OBART03G26340.1  91 TVEISKKYADVYlpF----EDGTVVL-QHHGKSWNVRCCLTKQNSKRFLK-GWRQFAGDNKLHLGDICLFDLLKDkKKYVMDVHIIRR 172
                      566788888666431....2225555.55*********996655554555.********************99887888888888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-2268172IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2169172IPR015300DNA-binding pseudobarrel domain
CDDcd100171.73E-1774171No hitNo description
PROSITE profilePS5086311.98477173IPR003340B3 DNA binding domain
SMARTSM010190.00178173IPR003340B3 DNA binding domain
PfamPF023626.6E-1392172IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MSGRSYDIAM RNSQDEKKKR KQRDISRQGT VKPSEEGLKA ELVPGCILPS RTDLTRLQKN  60
ILTEKVKAIN SETPIYGYVM NNSSIHGIPC TVEISKKYAD VYLPFEDGTV VLQHHGKSWN  120
VRCCLTKQNS KRFLKGWRQF AGDNKLHLGD ICLFDLLKDK KKYVMDVHII RRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0972801e-135AC097280.8 Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence.
GenBankAP0149591e-135AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-135CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629587.11e-125putative B3 domain-containing protein Os03g0621600
SwissprotQ851V11e-127Y3160_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0D3FLD11e-126A0A0D3FLD1_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZAN71e-126A0A0D9ZAN7_9ORYZ; Uncharacterized protein
TrEMBLI1PDK31e-125I1PDK3_ORYGL; Uncharacterized protein
STRINGOGLUM03G27210.11e-127(Oryza glumipatula)
STRINGORGLA03G0244900.11e-126(Oryza glaberrima)
STRINGOBART03G26340.11e-127(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.15e-12related to vernalization1 1