PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART03G27560.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YA

Protein Properties

Length: 189aa MW: 20267.9 Da PI: 10.1861

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART03G27560.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	45	3.6e-14	148	182	1	36
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 d+p+YVNaKQy++Il+RR +Rak+++e++l k+rk OBART03G27560.1 148 DAPIYVNAKQYEGILRRRRARAKAQRENRL-VKGRK 182 68****************************.88887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51152	18.617	147	189	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.5E-11	150	182	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MLSFKQSHEG FGHVAAAGAG PQQQQQPWWA GSQLLYGEAS PEEAALRDGG QFQVVPGGRA 60 ALDPAAPEPE KTAVPAMPKR GGGAPEVLKF SVFSGNLEPG DTGEKNREHS ATIAMQSPLP 120 EYNGHFELGL GQSMSGGRML LPLNAPADAP IYVNAKQYEG ILRRRRARAK AQRENRLVKG 180 RKVRTPASF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB288034	0.0	AB288034.1 Oryza sativa Japonica Group OsHAP2H mRNA for HAP2 subunit of HAP complex, complete cds.
GenBank	AK106398	0.0	AK106398.1 Oryza sativa Japonica Group cDNA clone:002-102-F12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025880121.1	4e-95	nuclear transcription factor Y subunit A-10 isoform X1
Refseq	XP_025880122.1	4e-95	nuclear transcription factor Y subunit A-10 isoform X1
TrEMBL	A0A0D3FLT0	1e-134	A0A0D3FLT0_9ORYZ; Uncharacterized protein
STRING	OBART03G27560.1	1e-134	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2307	37	90