PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G28190.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 143aa    MW: 15031.4 Da    PI: 8.2263
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G28190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.21.3e-2149106258
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTE.EEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkv.veitYegeHnh 58 
                      +Dgy+W+KYGqK +k+ +  rsY+rC  ++C +kkkve   +dp + + ++Y g H+h
  OBART03G28190.1  49 EDGYEWKKYGQKFIKNIQKNRSYFRCRDQRCGAKKKVEWHPHDPGLnLRVVYDGAHHH 106
                      7******************************************986479********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.243109IPR003657WRKY domain
SuperFamilySSF1182904.05E-2144109IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.0E-2445109IPR003657WRKY domain
SMARTSM007741.5E-2148108IPR003657WRKY domain
PfamPF031064.1E-2049106IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MNNRGAGGGR GQGDDEEPTP TPPPAPPPET APSTVGGGGG DGVQLVMPED GYEWKKYGQK  60
FIKNIQKNRS YFRCRDQRCG AKKKVEWHPH DPGLNLRVVY DGAHHHGSPS SAAGEGGASA  120
AAAANQYDLS TQYFGGAGGP RSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1338591e-120AC133859.4 Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete sequence.
GenBankAP0149591e-120AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-120CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629815.13e-75probable WRKY transcription factor 20 isoform X2
TrEMBLA0A0D3FM041e-100A0A0D3FM04_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0NZ321e-100A0A0E0NZ32_ORYRU; Uncharacterized protein
STRINGORUFI03G29320.11e-101(Oryza rufipogon)
STRINGOBART03G28190.11e-101(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101583444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-12WRKY DNA-binding protein 57