PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G29660.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 197aa    MW: 21714.9 Da    PI: 4.7119
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G29660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.31.3e-081331652254
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      ++yp+ +e+  LA  +gL+ +q+++WF N R +
  OBART03G29660.1 133 HPYPNDNEKLMLAVATGLSRTQISNWFINARVR 165
                      89*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.175106169IPR001356Homeobox domain
CDDcd000862.35E-11109170No hitNo description
SMARTSM003895.4E-9109173IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-26114175IPR009057Homeodomain-like
SuperFamilySSF466892.05E-17115177IPR009057Homeodomain-like
PfamPF059202.1E-17126165IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MANLASYYRV ALSEDCKVRL TMVASKQLHS QRCGGHYCQL HHHRPEEIAG AGAESHRRDG  60
SSGCGGAGPM VEDDEGDGEE EEEEEEEEVV NRVVRRTKQA AAARAEQAWR PLRGLPEDAV  120
GVLRAWLFDH FLHPYPNDNE KLMLAVATGL SRTQISNWFI NARVRLWKPM VEEMYNDEFD  180
DDDAGSGGGG GGASSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-17115173563Homeobox protein Meis2
4xrm_B1e-17115173563Homeobox protein Meis2
5bng_A1e-17115173159Homeobox protein Meis2
5bng_B1e-17115173159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0646651e-180AK064665.1 Oryza sativa Japonica Group cDNA clone:002-115-B07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879418.17e-53BEL1-like homeodomain protein 11
TrEMBLA0A0D3FMG01e-143A0A0D3FMG0_9ORYZ; Uncharacterized protein
STRINGOBART03G29660.11e-144(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-36BEL1-like homeodomain 11