PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G30260.3
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 837aa    MW: 93612.1 Da    PI: 9.1113
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G30260.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS389.73.3e-1194628331374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL++cA+av+++d + a++lL++++++a p+gd  qRla +f+ +L+arla+++s+ly++l +++t+    s+ l+a++l+  ++P+ ++s
  OBART03G30260.3 462 LRTLLIHCAQAVAADDRRTANELLKQIRQHAKPNGDGSQRLAYCFADGLEARLAGTGSQLYHKLVAKRTT---ASDMLKAYHLYLAACPFKRLS 552
                      6789************************************************************999999...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      h++ Nq+Il  ++++++vHiiDf+i  G+QWp+L++ L +R++gpp+lRiTg++ p++g   +e++eetg+rLa++Ae++gvpfe++  +a+++
  OBART03G30260.3 553 HFLSNQTILSLTKNASKVHIIDFGIYFGFQWPCLIRRLFKREGGPPKLRITGIDVPQPGfrPTERIEETGQRLAEYAEKIGVPFEYQG-IASKW 645
                      **********************************************************9*****************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      e++++e+L++k++E+++Vn+ ++  +l de+v+++s+r++vL+++++++P ++++   + +++ + F +rf eal ++salfd+le+++pr++ 
  OBART03G30260.3 646 ETIRVEDLNIKKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALFHFSALFDMLETTVPRDDA 739
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +r+ +Er l+gre+ nv+aceg++r+er et+++W+ r  +aGF + pl+++++ +ak  ++ ++ + + ++e+sg+l++gWk+r ++++S W+
  OBART03G30260.3 740 QRALIERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQDIVLKAKDKVKDIYHKDFVIDEDSGWLLQGWKGRIIYAISTWK 833
                      *****************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.06436813IPR005202Transcription factor GRAS
PfamPF035141.1E-116462833IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MTKMPSSPYS LSLSSFSLLP SLFPVFLLHR SVPLLLLLLS SIRTHRHLRS AAAAAAAAAR  60
PRSHAHLARR RREGPGNRWA AEGEKVLEGA TPRASPSRLG PNRRLSMGLD NNFGELSGMF  120
CGLSYDGYTD HGSQSDYFRF AGPQPAIVPQ MDAGPSSATS STASRAAVSS GTDNPEDWEF  180
ISDESLNYIS RMLMEEDIDE KVSMYQEESA ALRAAAKPFY DILGHKFPPS PDRQLVAWPL  240
DSPSESSTSS YPHSLASSVT SSNISGAVDS SQCRYVGHSE YRSLSGHSSQ PPVGPSSDVR  300
NAMETLEDPL ISNGRIPEYL FESFPTWDFR RGVDEAQKFL PGSDKVVIDL EAGGVAKRQE  360
AGKAISLNGS KAEVLKVKKN RQSEDLDVME GRNSKQSAFC SDEPDWIEMF DVLLRQTEKK  420
ATDLRKMMRF EASKNSQVAQ PKGPSGTRSR GRKPTKKDVV DLRTLLIHCA QAVAADDRRT  480
ANELLKQIRQ HAKPNGDGSQ RLAYCFADGL EARLAGTGSQ LYHKLVAKRT TASDMLKAYH  540
LYLAACPFKR LSHFLSNQTI LSLTKNASKV HIIDFGIYFG FQWPCLIRRL FKREGGPPKL  600
RITGIDVPQP GFRPTERIEE TGQRLAEYAE KIGVPFEYQG IASKWETIRV EDLNIKKDEV  660
VIVNCLYRFR NLIDETVAVD SPRNRVLNTI RQVNPAIFIH GIVNGSYSVP FFITRFREAL  720
FHFSALFDML ETTVPRDDAQ RALIERDLFG REALNVIACE GSDRVERPET YKQWQVRNLR  780
AGFVQSPLNQ DIVLKAKDKV KDIYHKDFVI DEDSGWLLQG WKGRIIYAIS TWKPNNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-514668338375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15971RPRSHAHLARRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0972770.0AC097277.6 Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete sequence.
GenBankAK1014020.0AK101402.1 Oryza sativa Japonica Group cDNA clone:J033037F15, full insert sequence.
GenBankAK1018480.0AK101848.1 Oryza sativa Japonica Group cDNA clone:J033069K04, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630936.10.0scarecrow-like protein 9
RefseqXP_015630937.10.0scarecrow-like protein 9
RefseqXP_015630938.10.0scarecrow-like protein 9
RefseqXP_015630939.10.0scarecrow-like protein 9
RefseqXP_015630940.10.0scarecrow-like protein 9
RefseqXP_015630941.10.0scarecrow-like protein 9
RefseqXP_015630942.10.0scarecrow-like protein 9
RefseqXP_015630943.10.0scarecrow-like protein 9
RefseqXP_015630944.10.0scarecrow-like protein 9
RefseqXP_025880243.10.0scarecrow-like protein 9
RefseqXP_025880244.10.0scarecrow-like protein 9
RefseqXP_025880245.10.0scarecrow-like protein 9
TrEMBLA0A0D3FMN40.0A0A0D3FMN4_9ORYZ; Uncharacterized protein
STRINGONIVA03G31510.30.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein