PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART03G32400.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 327aa MW: 36546.9 Da PI: 6.5302

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART03G32400.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	319.1	9.1e-98	21	327	70	374
GRAS 70 seknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeelee 160 ++ s+e + +k++++++P+ kf+hltaNqaIlea+ ++++Hi+Df+i qG+QW+aLlqaLa+Rpeg+p ++RiTgv sp g + +l + OBART03G32400.1 21 ARFASDELTLCYKTLNDACPYSKFAHLTANQAILEATGAATKIHIVDFGIVQGIQWAALLQALATRPEGKPtRIRITGVPSPLLGpqPAASLAA 114 33348889999******************************************************88777*****998888999 PP GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254 t+ rL++fA+ lgv+fef + + + +++l+ +++ v+p+Ea+aVn++lql++ll +s +l +vL+l kslsP vv++ e e+++n++ F+ OBART03G32400.1 115 TNTRLRDFAKLLGVDFEFVP-LLRPVHELNKSDFLVEPDEAVAVNFMLQLYHLLGDSDELVR---RVLRLAKSLSPAVVTLGEYEVSLNRAGFV 204 ****************.599**************************88888877...************************* PP GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvva.cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s 346 +rf++al+yy +lf+sl++ + r+s er+ vEr ++g++i+ +v ega+r+er+ ++W+ +e +GF+pvpls++a +qa+lll +++ + OBART03G32400.1 205 DRFANALSYYRSLFESLDVAMTRDSPERARVERWMFGERIQRAVGpEEGADRTERMAGSSEWQTLMEWCGFEPVPLSNYARSQADLLLWNYDsK 298 ****************************************8356889*************************************77 PP GRAS 347 dgyrveeesgslv.lgWkdrpLvsvSaWr 374 y++ e +++ l W++rpL++vSaWr OBART03G32400.1 299 YKYSLVELPPAFLsLAWEKRPLLTVSAWR 327 78999999999988************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	51.243	1	305	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.1E-95	21	327	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MVVRRRLACG TGAPPSAEPD ARFASDELTL CYKTLNDACP YSKFAHLTAN QAILEATGAA 60 TKIHIVDFGI VQGIQWAALL QALATRPEGK PTRIRITGVP SPLLGPQPAA SLAATNTRLR 120 DFAKLLGVDF EFVPLLRPVH ELNKSDFLVE PDEAVAVNFM LQLYHLLGDS DELVRRVLRL 180 AKSLSPAVVT LGEYEVSLNR AGFVDRFANA LSYYRSLFES LDVAMTRDSP ERARVERWMF 240 GERIQRAVGP EEGADRTERM AGSSEWQTLM EWCGFEPVPL SNYARSQADL LLWNYDSKYK 300 YSLVELPPAF LSLAWEKRPL LTVSAWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	0.0	5	327	53	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250\|UniProtKB:A0A024B7I0, ECO:0000250\|UniProtKB:Q9SCR0, ECO:0000269\|PubMed:27081181}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC146936	0.0	AC146936.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone B1154F06 map near C10769, complete sequence.
GenBank	AK064022	0.0	AK064022.1 Oryza sativa Japonica Group cDNA clone:001-125-A04, full insert sequence.
GenBank	AK101603	0.0	AK101603.1 Oryza sativa Japonica Group cDNA clone:J033051K20, full insert sequence.
GenBank	AK102857	0.0	AK102857.1 Oryza sativa Japonica Group cDNA clone:J033110P03, full insert sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628849.1	0.0	SCARECROW-LIKE protein 7
Swissprot	Q53K16	0.0	SCL7_ORYSJ; SCARECROW-LIKE protein 7
TrEMBL	A0A0D3FNF0	0.0	A0A0D3FNF0_9ORYZ; Uncharacterized protein
STRING	OBART03G32400.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8569	37	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66770.1	1e-134	GRAS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Li S, et al. Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa. Plant Cell, 2016. 28(5): p. 1025-34 [PMID:27081181]