PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G33050.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 500aa    MW: 53061.9 Da    PI: 8.6006
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G33050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-093654021954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  OBART03G33050.1 365 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 402
                      664459******************************88 PP
2BELL69.75.3e-23234296272
             BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      r e+q+kkakL+s+l+e   +        ++v++ F+ v+g g+a+pYt+lA+ka+SrhFrcLkdaia q+
  OBART03G33050.1 234 RFEHQRKKAKLISMLDEARGQ--------EMVVNFFDSVMGFGAATPYTALAQKAMSRHFRCLKDAIAAQL 296
                      779*************97653........89*************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.4E-46157294IPR006563POX domain
PfamPF075262.7E-37162293IPR006563POX domain
PROSITE profilePS5007112.6343406IPR001356Homeobox domain
SMARTSM003891.6E-9346410IPR001356Homeobox domain
CDDcd000867.82E-13346407No hitNo description
SuperFamilySSF466891.41E-17347413IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-29349412IPR009057Homeodomain-like
PfamPF059202.3E-18363402IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MERRRSRRQQ AFHPVAAEEE EEEGLVVVGR RSTADDGDSG AAGMGIAAPP CQPGQTTTFV  60
ISQPTSSKSS PAAIVVRPPA TASSSSMSHS QGFHQPSSGA AEELRVRDGV LYFNRQQQQQ  120
QAAAAAASVQ QQLPMALHGQ VGVLGQQLHG GGYGGPAGVA GVLRNSKYTR AAQELLEEFC  180
SVGRGQIKGG GGRGSAPNNP NSSKAAAGAA SSSGAAQSPS SASKEPPQLS PADRFEHQRK  240
KAKLISMLDE ARGQEMVVNF FDSVMGFGAA TPYTALAQKA MSRHFRCLKD AIAAQLRGTC  300
EALGEKDAGT GSGLTKGETP RLRAIDQSLR QQRAFHHMGI MEQEAWRPQR GLPERSVNIL  360
RSWLFEHFLH PYPSDADKHL LARQTGLSRN QVSNWFINAR VRLWKPMIEE MYQQECKELE  420
GSSGAGDDPS GADDTHSPTT TAAAHHQHRH GQLMVEHGGA SSGGGAAMSS HKHEPGVHAG  480
AGNAGPDGSG RFSLRDYSGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-17352409158Homeobox protein Meis1
4xrs_B2e-17352409158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2874760.0AK287476.1 Oryza sativa Japonica Group cDNA, clone: J043023B19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466514.10.0BEL1-like homeodomain protein 4
SwissprotQ9SW801e-121BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A0D3FNP00.0A0A0D3FNP0_9ORYZ; Uncharacterized protein
STRINGOBART03G33050.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44332945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-111BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]