PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART03G33610.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 273aa MW: 30141.7 Da PI: 7.3254

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART03G33610.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.5	4.8e-08	106	150	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr+RR+++ ++++ L ++ ++ K +K +i++ A YI++L OBART03G33610.1 106 HMMRERQRREKLSQSYADLYAMVSSR-----SKGDKNSIVQSAAIYIHEL 150 889********************8.....6999999*******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.395	101	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.02E-12	102	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-5	106	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-9	106	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.50E-7	106	151	No hit	No description
SMART	SM00353	1.0E-4	107	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MESYYGAFHA DEAAFFFPHH VPASPELPFG LIASPEPEPE PEQAAAEARQ SAFQEYGGAV 60 HAGAPAAAGA VTTGGTNIHR RVMDVLGRSG RRRRRGGEGG GRGFRHMMRE RQRREKLSQS 120 YADLYAMVSS RSKGDKNSIV QSAAIYIHEL KVARDQLQRR NEELKAQIMG HDEQQPCVTV 180 QFEVDEPSSS IDSMIAALRR LKGMSVKARG IRSSMSGNRL WTEMNVETTI AACEVEKAVE 240 EALKEVERNQ PDSDAPFPGS KGWTQTSHVQ NVF

Functional Description ? help Back to Top
Source	Description
UniProt	May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269\|PubMed:21332845}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269\|PubMed:21332845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071734	0.0	AK071734.1 Oryza sativa Japonica Group cDNA clone:J023108N23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631231.1	1e-164	transcription factor BHLH148
Swissprot	Q75KV9	1e-165	BH148_ORYSJ; Transcription factor BHLH148
TrEMBL	A0A0D3FNV6	0.0	A0A0D3FNV6_9ORYZ; Uncharacterized protein
STRING	OBART03G33610.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5940	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	2e-18	bHLH family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217]