PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G35680.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 319aa    MW: 34930.5 Da    PI: 9.1982
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G35680.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-092312652155
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      k +yps+ e+  LA+ +gL+++q+ +WF N+R ++
  OBART03G35680.2 231 KWPYPSEMEKMTLAQTTGLDQKQINNWFINQRKRH 265
                      569*****************************885 PP
2ELK37.74.3e-13185206122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      +LKhqLlrKY+g+Lg+L+q Fs
  OBART03G35680.2 185 QLKHQLLRKYGGSLGDLRQVFS 206
                      59*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.4E-1981125IPR005540KNOX1
PfamPF037904.2E-1982121IPR005540KNOX1
SMARTSM012561.0E-17136188IPR005541KNOX2
PfamPF037913.2E-16146180IPR005541KNOX2
PfamPF037892.6E-8185203IPR005539ELK domain
PROSITE profilePS512139.324185205IPR005539ELK domain
SMARTSM011882.3E-5185206IPR005539ELK domain
PROSITE profilePS5007112.503205268IPR001356Homeobox domain
SuperFamilySSF466891.88E-18207272IPR009057Homeodomain-like
SMARTSM003891.2E-11207272IPR001356Homeobox domain
CDDcd000861.62E-13208268No hitNo description
Gene3DG3DSA:1.10.10.608.5E-27210268IPR009057Homeodomain-like
PfamPF059206.1E-17225264IPR008422Homeobox KN domain
PROSITE patternPS000270243266IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MESFASLAGG GSSSTTARLP ELISPENPDH ISPPPLLYQL LAGPESSARQ HGRDGHHHGG  60
GSGAAAAAAV QGQVSPAGAE AAVKAEIMSH PQYSALLAAY LGCKKVGAPP DVLTKLTAVP  120
AAQQLDEADG HPRRRHEPQR DDDPDQLDQF MDAYCSMLTR YREELERPIQ EAAEFFSRID  180
PSDKQLKHQL LRKYGGSLGD LRQVFSKRTK KGKLPKEARQ KLLHWWELHY KWPYPSEMEK  240
MTLAQTTGLD QKQINNWFIN QRKRHWKPTP VAGTAFPTME AAGGGFRHSG HGGGLAAAAA  300
LPLYMGRPFV VDGMYRLGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00671PBMTransfer from GRMZM2G135447Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0288840.0AB028884.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete cds.
GenBankAK1072960.0AK107296.1 Oryza sativa Japonica Group cDNA clone:002-126-C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879467.10.0homeobox protein knotted-1-like 8 isoform X2
SwissprotQ10ED20.0KNOS8_ORYSJ; Homeobox protein knotted-1-like 8
TrEMBLA0A0D3FPL10.0A0A0D3FPL1_9ORYZ; Uncharacterized protein
STRINGOS03T0771500-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-59KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]