PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G35710.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 315aa    MW: 34057.4 Da    PI: 8.4754
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G35710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82e-092272612155
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      k +yps+ e+  LA+ +gL+++q+ +WF N+R ++
  OBART03G35710.1 227 KWPYPSEMEKMTLAQTTGLDQKQINNWFINQRKRH 261
                      569*****************************885 PP
2ELK37.74.2e-13181202122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      +LKhqLlrKY+g+Lg+L+q Fs
  OBART03G35710.1 181 QLKHQLLRKYGGSLGDLRQVFS 202
                      59*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.5E-2079123IPR005540KNOX1
PfamPF037901.2E-1980119IPR005540KNOX1
SMARTSM011882.3E-5181202IPR005539ELK domain
PfamPF037892.6E-8181199IPR005539ELK domain
PROSITE profilePS512139.324181201IPR005539ELK domain
PROSITE profilePS5007112.503201264IPR001356Homeobox domain
SuperFamilySSF466891.84E-18203268IPR009057Homeodomain-like
SMARTSM003891.2E-11203268IPR001356Homeobox domain
CDDcd000862.06E-14204264No hitNo description
Gene3DG3DSA:1.10.10.608.3E-27206264IPR009057Homeodomain-like
PfamPF059206.0E-17221260IPR008422Homeobox KN domain
PROSITE patternPS000270239262IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MESFASLAGG GSSSTTARLP ELIPPENPDR ISPPPLLYQL LAGSASSARH GHGHHHGGGG  60
GAAAAAVQGL QVSPAGAEAA MKAEIMSHPQ YSALLAAYLG CKKVGAPPDV LTKLTAVPAA  120
QQQLDAADGH PRRRHEPRRD DDVPDHQLDQ FMSNCEGTGS SEEEQDQDTS CPEEIDPSDK  180
QLKHQLLRKY GGSLGDLRQV FSKRTKKGKL PKEARQKLLH WWELHYKWPY PSEMEKMTLA  240
QTTGLDQKQI NNWFINQRKR HWKPTPVAGT AFPTMEAAGG GFRHSGHGGG LAAAAALPLY  300
MGRPFVVDGM YRLGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0288840.0AB028884.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete cds.
GenBankAK1072960.0AK107296.1 Oryza sativa Japonica Group cDNA clone:002-126-C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879690.11e-176homeobox protein knotted-1-like 9
SwissprotQ10EC61e-178KNOS9_ORYSJ; Homeobox protein knotted-1-like 9
TrEMBLA0A0D3FPL40.0A0A0D3FPL4_9ORYZ; Uncharacterized protein
STRINGOBART03G35710.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147561321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.18e-53KNOTTED-like from Arabidopsis thaliana