PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART03G35710.2

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TALE

Protein Properties

Length: 294aa MW: 31843.2 Da PI: 10.0997

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART03G35710.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.9	1.9e-09	206	240	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps+ e+ LA+ +gL+++q+ +WF N+R ++ OBART03G35710.2 206 KWPYPSEMEKMTLAQTTGLDQKQINNWFINQRKRH 240 669*****************************885 PP
2	ELK	37.9	3.9e-13	160	181	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LKhqLlrKY+g+Lg+L+q Fs OBART03G35710.2 160 QLKHQLLRKYGGSLGDLRQVFS 181 59*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	2.5E-20	79	123	IPR005540	KNOX1
Pfam	PF03790	1.1E-19	80	119	IPR005540	KNOX1
PROSITE profile	PS51213	9.324	160	180	IPR005539	ELK domain
Pfam	PF03789	2.4E-8	160	178	IPR005539	ELK domain
SMART	SM01188	2.3E-5	160	181	IPR005539	ELK domain
PROSITE profile	PS50071	12.503	180	243	IPR001356	Homeobox domain
SMART	SM00389	1.2E-11	182	247	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.63E-18	182	247	IPR009057	Homeodomain-like
CDD	cd00086	2.26E-14	183	243	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.4E-27	185	243	IPR009057	Homeodomain-like
Pfam	PF05920	5.4E-17	200	239	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	218	241	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MESFASLAGG GSSSTTARLP ELIPPENPDR ISPPPLLYQL LAGSASSARH GHGHHHGGGG 60 GAAAAAVQGL QVSPAGAEAA MKAEIMSHPQ YSALLAAYLG CKKVGAPPDV LTKLTAVPAA 120 QQQLDAADGH PRRRHEPRRD DDVPDHQLDQ FMEIDPSDKQ LKHQLLRKYG GSLGDLRQVF 180 SKRTKKGKLP KEARQKLLHW WELHYKWPYP SEMEKMTLAQ TTGLDQKQIN NWFINQRKRH 240 WKPTPVAGTA FPTMEAAGGG FRHSGHGGGL AAAAALPLYM GRPFVVDGMY RLGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269\|PubMed:10488233}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028884	0.0	AB028884.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete cds.
GenBank	AK107296	0.0	AK107296.1 Oryza sativa Japonica Group cDNA clone:002-126-C04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025879467.1	1e-165	homeobox protein knotted-1-like 8 isoform X2
Swissprot	Q10ED2	1e-166	KNOS8_ORYSJ; Homeobox protein knotted-1-like 8
TrEMBL	A0A0D3FPL5	0.0	A0A0D3FPL5_9ORYZ; Uncharacterized protein
STRING	OBART03G35710.1	1e-174	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08150.1	5e-38	KNOTTED-like from Arabidopsis thaliana

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]