PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART03G37370.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 423aa MW: 44053.7 Da PI: 4.8606

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART03G37370.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42	2e-13	233	285	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 + +rrkq+NRe+ArrsR RK a + eLe v +L eN++L +l ++++ OBART03G37370.1 233 RLQRRKQSNRESARRSRSRKAAHLNELEAQVSQLRVENSSLLRRLADVNQKYN 285 789***************************************99988888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-17	229	293	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.392	231	285	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.3E-10	231	285	No hit	No description
Pfam	PF00170	1.2E-10	233	284	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.31E-9	233	283	No hit	No description
Pfam	PF12498	5.2E-51	300	416	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071215	Biological Process	cellular response to abscisic acid stimulus
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MERVFSVEEI SDPFWVPPPP PQSAAAAQQQ GGGGGVASGG GGGVAGGGGG GNAMNRCPSE 60 WYFQKFLEEA VLDSPVPNPS PRAEAGGIRG AGGVVPVDVK QPQLSAAAAA TTSAVVDPVE 120 YNAMLKQKLE KDLAAVAMWR ASGTVPPERP GAGSSLLNAD VSHIGAPNSI GGNATPVQNM 180 LSGPSGGSGS QLVQNVDVLV KQPTSSSSRE QSDDDDMEGE AETTGTARPA DQRLQRRKQS 240 NRESARRSRS RKAAHLNELE AQVSQLRVEN SSLLRRLADV NQKYNDAAVD NRVLKADVET 300 LRAKVKMAED SVKRVTGMNA LFPAASDMSS LSMPFNSSPS EATSDAAVPI QDDPNNYFAT 360 NNDIGGNNYM PDIPSSAQED EDFVNGALAA GKIGRTASLQ RVASLEHLQK RMCGGPASSG 420 STS

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MERVFSVEEI SDPFWVPPPP PQSAAAAQQQ GGGGGVASGG GGGVAGGGGG GNAMNRCPSE  60
WYFQKFLEEA VLDSPVPNPS PRAEAGGIRG AGGVVPVDVK QPQLSAAAAA TTSAVVDPVE  120
YNAMLKQKLE KDLAAVAMWR ASGTVPPERP GAGSSLLNAD VSHIGAPNSI GGNATPVQNM  180
LSGPSGGSGS QLVQNVDVLV KQPTSSSSRE QSDDDDMEGE AETTGTARPA DQRLQRRKQS  240
NRESARRSRS RKAAHLNELE AQVSQLRVEN SSLLRRLADV NQKYNDAAVD NRVLKADVET  300
LRAKVKMAED SVKRVTGMNA LFPAASDMSS LSMPFNSSPS EATSDAAVPI QDDPNNYFAT  360
NNDIGGNNYM PDIPSSAQED EDFVNGALAA GKIGRTASLQ RVASLEHLQK RMCGGPASSG  420
STS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:11572990, ECO:0000269\|PubMed:9049271}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00040	PBM	Transfer from AT5G28770	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068589	0.0	AK068589.1 Oryza sativa Japonica Group cDNA clone:J013153H07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631619.1	0.0	bZIP transcription factor RISBZ2-like
Swissprot	Q7X9A8	0.0	RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBL	A0A0D3FQ60	0.0	A0A0D3FQ60_9ORYZ; Uncharacterized protein
STRING	OBART03G37370.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3488	38	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	4e-34	bZIP family protein

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Yang D,Wu L,Hwang YS,Chen L,Huang N Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43 [PMID:11572990] Cheng S,Wang Z,Hong M Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene. Sci. China, C, Life Sci., 2002. 45(4): p. 352-60 [PMID:18759022]