PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G38300.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 254aa    MW: 27716.4 Da    PI: 5.7535
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G38300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.53.8e-10125151127
                      XXXXCHHHCHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkae 27 
                      e+elkrerrkq+NRe+ArrsR+RK+++
  OBART03G38300.1 125 ERELKRERRKQSNRESARRSRLRKQER 151
                      89***********************97 PP
2bZIP_128.43.6e-091712082663
                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  26 aeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      +e+eeL +kv  L+a N++L+ el++lkk ++ +++e+
  OBART03G38300.1 171 QECEELSQKVTDLTAVNSTLRTELDKLKKDCEDMEAEN 208
                      89********************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.3E-16118206No hitNo description
PfamPF001701.1E-7125151IPR004827Basic-leucine zipper domain
SMARTSM003385.5E-16125210IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.25E-5129154No hitNo description
CDDcd147022.58E-13130201No hitNo description
PROSITE patternPS000360132147IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAGCAVPSAA AEGKSKRKTS GGPSGEDSSG SGDGGSEDSS ERRDDADEKG LSPAKWRKLG  60
HPDIEGETSQ AAAMSEQNPV KAAPNLNIGM DIWSNSTMAA MPSGQVEVNA GTHLRRDKAL  120
SQMDERELKR ERRKQSNRES ARRSRLRKQE RPTSFCHPPN YPVTFYGLTN QECEELSQKV  180
TDLTAVNSTL RTELDKLKKD CEDMEAENSQ LMDEMVQSEG SSVIATLSIK IDTSKDRHGS  240
SSQLNKHTND DSKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141147RRSRLRK
2141148RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1022501e-133AK102250.1 Oryza sativa Japonica Group cDNA clone:J033088G19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632128.11e-139DNA-binding protein EMBP-1 isoform X2
RefseqXP_015632129.11e-139DNA-binding protein EMBP-1 isoform X3
RefseqXP_025879814.11e-139DNA-binding protein EMBP-1 isoform X1
RefseqXP_025879815.11e-139DNA-binding protein EMBP-1 isoform X4
RefseqXP_025879816.11e-139DNA-binding protein EMBP-1 isoform X5
SwissprotP250323e-40EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A0D3FQH30.0A0A0D3FQH3_9ORYZ; Uncharacterized protein
TrEMBLI1PGK60.0I1PGK6_ORYGL; Uncharacterized protein
STRINGORGLA03G0350200.10.0(Oryza glaberrima)
STRINGOBART03G38300.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.27e-27G-box binding factor 1