PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G38710.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 236aa    MW: 24939.2 Da    PI: 10.6773
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G38710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-1876125255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +++GVr+++ +gr++AeIrdp     +  +r +lg+f+taeeAa+a++aa  +l+g
  OBART03G38710.1  76 RFRGVRQRP-WGRFAAEIRDP-----HlrRRLWLGTFDTAEEAAAAYDAASVRLRG 125
                      69*******.**********8.....556**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.10E-1875133No hitNo description
PROSITE profilePS5103222.64276133IPR001471AP2/ERF domain
SMARTSM003807.9E-3276139IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-2076133IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-2876134IPR001471AP2/ERF domain
PfamPF008476.4E-1276125IPR001471AP2/ERF domain
PRINTSPR003673.4E-107788IPR001471AP2/ERF domain
PRINTSPR003673.4E-1099115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGTNPSLHEL AAGAAPRGRV VRILVRDADA TDSSSSEDEA VAVAQPRPRR RGKVGGGGGG  60
APRDGGGGGE ARPTARFRGV RQRPWGRFAA EIRDPHLRRR LWLGTFDTAE EAAAAYDAAS  120
VRLRGSSAAT NFASVRCYSL PPELPKPTIS PPEAAVRPIT LPIGTAEPTL LPRVKEEGES  180
CGGRVKEEAS SCEVQVLAPE PMWTMISGKR KKRSGCGTRV RAFHAVSARV EEVGGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1877132662ATERF1
3gcc_A1e-1877132662ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1330070.0AC133007.4 Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence.
GenBankAC1391720.0AC139172.2 Oryza sativa chromosome 3 BAC OSJNBb0042K11 genomic sequence, complete sequence.
GenBankAK0682520.0AK068252.1 Oryza sativa Japonica Group cDNA clone:J013145D23, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8294450.0CT829445.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA045M03, full insert sequence.
GenBankCU4062130.0CU406213.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108D05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628091.11e-136ethylene-responsive transcription factor CRF5
TrEMBLA0A0D3FQL51e-165A0A0D3FQL5_9ORYZ; Uncharacterized protein
STRINGOBART03G38710.11e-165(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.17e-18cytokinin response factor 3