PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART03G39050.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 160aa MW: 17084.3 Da PI: 8.2582

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART03G39050.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0014	45	67	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H OBART03G39050.1 45 FVCKTCSRAFPSFQALGGHRTSH 67 89**********99998888777 PP
2	zf-C2H2	12.7	0.00039	99	121	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F L H+r+H OBART03G39050.1 99 HECHICGLGFEMGQALGGHMRRH 121 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	7.2E-11	45	69	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.868	45	72	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.51	45	67	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.5E-6	45	67	No hit	No description
PROSITE pattern	PS00028	0	47	67	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.5E-6	94	121	No hit	No description
Pfam	PF13912	1.3E-10	99	124	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.49	99	121	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.827	99	126	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	101	121	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MTKHPRDGEV ISLSLSLMLG AAADSGERKK PRRGSSPAAS GSGDFVCKTC SRAFPSFQAL 60 GGHRTSHLRG RSNGLDLGAI GDKAIRLHRA ADKEHMDKHE CHICGLGFEM GQALGGHMRR 120 HREEMAAAGG GSSADDWVWR CDARPEGIAA EPPVLLELFA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269\|PubMed:11069694, ECO:0000269\|PubMed:14722088, ECO:0000269\|PubMed:15634197, ECO:0000269\|PubMed:16183833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269\|PubMed:12368499, ECO:0000269\|PubMed:14722088, ECO:0000269\|PubMed:15634197, ECO:0000269\|PubMed:16183833, ECO:0000269\|PubMed:18201973, ECO:0000269\|PubMed:18922600}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC104433	1e-179	AC104433.8 Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence.
GenBank	AK068861	1e-179	AK068861.1 Oryza sativa Japonica Group cDNA clone:J013170H07, full insert sequence.
GenBank	AP014959	1e-179	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	AY286474	1e-179	AY286474.1 Oryza sativa (japonica cultivar-group) zinc finger protein ZFP182 mRNA, complete cds.
GenBank	CP012611	1e-179	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBank	CT829316	1e-179	CT829316.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI011O15, full insert sequence.
GenBank	CT829317	1e-179	CT829317.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI016A02, full insert sequence.
GenBank	CT829318	1e-179	CT829318.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI021E01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629244.1	7e-83	zinc finger protein ZAT12
Swissprot	Q42410	4e-20	ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBL	A0A0D3FQQ2	1e-111	A0A0D3FQQ2_9ORYZ; Uncharacterized protein
STRING	OBART03G39050.1	1e-112	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1305	30	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59820.1	5e-20	C2H2 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Shi H,Chan Z The cysteine2/histidine2-type transcription factor ZINC FINGER OF ARABIDOPSIS THALIANA 6-activated C-REPEAT-BINDING FACTOR pathway is essential for melatonin-mediated freezing stress resistance in Arabidopsis. J. Pineal Res., 2014. 57(2): p. 185-91 [PMID:24962049] Munekage YN,Inoue S,Yoneda Y,Yokota A Distinct palisade tissue development processes promoted by leaf autonomous signalling and long-distance signalling in Arabidopsis thaliana. Plant Cell Environ., 2015. 38(6): p. 1116-26 [PMID:25293694] Le CT, et al. ZINC FINGER OF ARABIDOPSIS THALIANA12 (ZAT12) Interacts with FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (FIT) Linking Iron Deficiency and Oxidative Stress Responses. Plant Physiol., 2016. 170(1): p. 540-57 [PMID:26556796] Ben Daniel BH, et al. Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one-hybrid screens. Physiol Plant, 2016. 157(4): p. 422-41 [PMID:26923089] Tang Y, et al. Oxidative stress-induced toxicity of CuO nanoparticles and related toxicogenomic responses in Arabidopsis thaliana. Environ. Pollut., 2016. 212: p. 605-614 [PMID:27016889] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Xu J,Tran T,Padilla Marcia CS,Braun DM,Goggin FL Superoxide-responsive gene expression in Arabidopsis thaliana and Zea mays. Plant Physiol. Biochem., 2017. 117: p. 51-60 [PMID:28587993] Nguyen HM, et al. Ethanol Enhances High-Salinity Stress Tolerance by Detoxifying Reactive Oxygen Species in Arabidopsis thaliana and Rice. Front Plant Sci, 2017. 8: p. 1001 [PMID:28717360]