PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G39990.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 92aa    MW: 10021.6 Da    PI: 10.6688
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G39990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.94.1e-16241746
                     HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
           SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                     + rqvt  k rn +lKKA+EL  LCdae+ +iifss+g+l
  OBART03G39990.1  2 TSRQVTSGKHRNDLLKKAYELALLCDAEIGLIIFSSRGRL 41
                     679***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.502148IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-8147IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-15248IPR002100Transcription factor, MADS-box
PfamPF003195.2E-15241IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-121025IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-122546IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MTSRQVTSGK HRNDLLKKAY ELALLCDAEI GLIIFSSRGR LCCIATDKLL SSSPRILLDF  60
SASSRQHGKA HNGQGRVATF MLVPPGPRGH FA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0925571e-58AC092557.7 Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete sequence.
GenBankAP0149591e-58AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-58CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3FR174e-61A0A0D3FR17_9ORYZ; Uncharacterized protein
STRINGOBART03G39990.18e-62(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.22e-16MIKC_MADS family protein