PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G40190.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 196aa    MW: 21019.5 Da    PI: 8.5006
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G40190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49.2e-10113158247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g+W++eE+ + ++++++ G g+W+ I+ +    Rt+ q+ s+ qky
  OBART03G40190.1 113 GPWSEEEHRQCLRGIEEIGHGRWTQISIEYVPSRTPIQIASHSQKY 158
                      89*************************98888************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.427107163IPR017930Myb domain
SuperFamilySSF466894.26E-14108164IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-10110161IPR006447Myb domain, plants
SMARTSM007173.6E-6111161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-10113154IPR009057Homeodomain-like
PfamPF002492.7E-8113158IPR001005SANT/Myb domain
CDDcd001671.43E-7114154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGDLVGDGAA PAAAEPAPAA AACRWTRQKD KLLETLVARC AMNRQTAAQV EQRYGEDSRG  60
GETRHGGALG CGRPCNAAAA AAVPAAPVKH AAAGPGSDGG GEEGKVVVEK KSGPWSEEEH  120
RQCLRGIEEI GHGRWTQISI EYVPSRTPIQ IASHSQKYFL RMAKPKEDRK RKSIHDTPYH  180
LHLPNAADAH AHQQQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126111e-123CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629677.13e-95transcription factor MYBS1-like
TrEMBLA0A0D3FR411e-141A0A0D3FR41_9ORYZ; Uncharacterized protein
STRINGOBART03G40190.11e-142(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1818388
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-18MYB family protein