PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G40270.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 311aa    MW: 33084.7 Da    PI: 4.5174
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G40270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.75.2e-07165186223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C+ Cgk F+r  nL+ H+r H
  OBART03G40270.1 165 FCGVCGKGFKRDANLRMHMRGH 186
                      6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.83E-5162189No hitNo description
PROSITE profilePS5015711.697164191IPR007087Zinc finger, C2H2
PfamPF128746.1E-4165186No hitNo description
Gene3DG3DSA:3.30.160.601.3E-5166190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MMISTSADHF SNNNNNQAMY LEQDEDFSQM IMELCDFDAS STTQARHGGE AAAAAAGDAR  60
AVLTYLTFLE QKIGHLRGII SSTPNPPPQI VAAELSCIVV QLVSISKNLA AARRGGDDAD  120
ADAKHDGSSD ADEGADGDGE RAPPRGSYEV VQIEKEEILA PHVHFCGVCG KGFKRDANLR  180
MHMRGHGEEY KSAAVLAKPG GSPSRSPAAA DAAARRRLLL LPDKLFAHVA IFDGHSPALP  240
PEDYDDDAAS GQLPHAAGEA VGRTVDTNRF FSDGLMIKGS MDDERGSLSP MGLDYCEFDG  300
IDLFAAAAFD F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1044870.0AC104487.3 Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence.
GenBankAK2876050.0AK287605.1 Oryza sativa Japonica Group cDNA, clone: J065055P16, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630047.11e-119zinc finger protein STOP1 homolog
TrEMBLA0A0D3FR520.0A0A0D3FR52_9ORYZ; Uncharacterized protein
STRINGOBART03G40270.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.33e-26C2H2 family protein