PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G41530.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 87aa    MW: 9507.98 Da    PI: 4.5501
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G41530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.2e-08448344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +W++ E  ++ +a + + ++   +W++Ia  +g g+t+ +++ ++
  OBART03G41530.1  4 SWSESENARFEQALATYDSDnpnRWELIATAVGGGKTADDVRCHY 48
                     6*****************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.342152IPR017877Myb-like domain
SMARTSM007173.4E-5154IPR001005SANT/Myb domain
SuperFamilySSF466893.2E-11459IPR009057Homeodomain-like
PfamPF002495.9E-7448IPR001005SANT/Myb domain
CDDcd001674.54E-6448No hitNo description
Gene3DG3DSA:1.10.10.608.3E-6455IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MAASWSESEN ARFEQALATY DSDNPNRWEL IATAVGGGKT ADDVRCHYDH LQHDVTTIDD  60
DHSHAAGEAL PNGNNNNNTN KGNRNQA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1286471e-130AC128647.8 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBb0062G19, complete sequence.
GenBankAP0149591e-130AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-130CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879511.13e-57protein RADIALIS-like 3
SwissprotF4JVB83e-15RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A0D3FRJ91e-57A0A0D3FRJ9_9ORYZ; Uncharacterized protein
STRINGOBART03G41530.12e-58(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.18e-18RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]