PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G00200.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 832aa    MW: 90374.6 Da    PI: 5.0342
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G00200.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-075485127
                     --S---SGGGGTS.....--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartG.....tCkyGdrCkFaHgp 27
                     +kt+lC+ff+r        C++Gd+C++aH++
  OBART04G00200.2 54 WKTSLCSFFRRRAassadGCSHGDSCRYAHSE 85
                     8**********88*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.6E-125091IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.44E-65190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3385386IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-55485IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.70.3301.0E-5133183IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168744.458227832IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.25E-49229255IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.25E-49287390IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.25E-49449576IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1503.5E-63472576IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138472.0E-9516578IPR025714Methyltransferase domain
CDDcd024402.06E-7522576No hitNo description
Gene3DG3DSA:3.40.50.1503.5E-63715772IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.25E-49720832IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059589.8E-7725768IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300728760IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1503.5E-63807832IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
METEMEMEDN KAPSPPPPME SDIAGEKRKR EDDESSSAVL AAANNTAGAQ HPMWKTSLCS  60
FFRRRAASSA DGCSHGDSCR YAHSEEELRP RPDGTWDPTS DRAKKLRKVA AEEVEEEVVT  120
VDDKALDKCL VGLPRAKKKK GMTVGFVTFE NIEQLKNAIE VLTENQSGGK EIKIADANRR  180
SHQKLHTEKP VSDNGVATEN GTSVDVPPGE TSAPEAAISN KKSVRDAVTP LAHMSYNDQL  240
EHKKNSVAQI LKRLTRNARK ACPTGIPLPD WVFKSKEIGG LPCKLEGILE SPVINGYRNK  300
CEFSVGFSLE GKKTVGFMLG NFREGVTAVE EPVDCPNVSE ISCKYALIFQ DFLQSSSLPV  360
WNRVDNCGFW RQFTVREGRC RAQPVAQNAE TQISEVMLIV QVCSTGVDDA LMKDEFDKLT  420
VALQQGAATC SPPLPLTTIV VQDHKGISNA APADCPLIPL LVPKVDQSEG TVDKTRIHDH  480
IGNLRFSISP TAFFQVNTLA AERLYTLAGD WANLNSGTLL FDVCCGTGTI GLTLAHRVGM  540
VVGIEMNESA VSDAERNALI NGVSNCRFVC GKAEDVMGSL LTEYLGSPQQ DIPVSEGAVS  600
GTVKDEEVID GSKNSGENLD SSMQKNDNGE SQQLGDAPAD SSSSAIDEIK GNSNDRVGNG  660
LKGSHDEYNE VAGEDIHGEA SLINESVDLK VSDCLEDRKT SDDGSSISNN DVTAATACQF  720
EDIVAIVDPP RVGLHPTVIK ALRTHPRIRR LVYISCNPDS LVANAIELCT PSSERQEKNK  780
GNRGWRTMSS AGLARQRTKS MPNSEPFVPK RAMAVDLFPH TSHCEMVMLF ER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A3e-16486583274371Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1201560.0AK120156.1 Oryza sativa Japonica Group cDNA clone:J013030B09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636996.10.0zinc finger CCCH domain-containing protein 24 isoform X1
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A0D3FRT60.0A0A0D3FRT6_9ORYZ; Uncharacterized protein
STRINGOBART04G00200.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.20.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]