PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G00520.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 733aa    MW: 80665 Da    PI: 4.7615
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G00520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.1e-09181222346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT +E +ll++a + +  + W  Ia+++  ++t  qc +++++
  OBART04G00520.1 181 SWTDQETLLLLEALEIFQAK-WGDIAEHVA-TKTKAQCMLHFLQ 222
                      7*******************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5093411.742152IPR007526SWIRM domain
SuperFamilySSF466891.52E-5251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.106.1E-5347IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF578501.12E-10116164No hitNo description
PROSITE profilePS501358.697119165IPR000433Zinc finger, ZZ-type
SMARTSM002914.4E-5119163IPR000433Zinc finger, ZZ-type
CDDcd023361.91E-20123167No hitNo description
PROSITE patternPS013570125151IPR000433Zinc finger, ZZ-type
PROSITE profilePS5129318.846177228IPR017884SANT domain
SuperFamilySSF466891.5E-10178231IPR009057Homeodomain-like
SMARTSM007171.0E-9178226IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-6180220IPR009057Homeodomain-like
PfamPF002498.0E-9181223IPR001005SANT/Myb domain
PfamPF164955.0E-22627704IPR032451SMARCC, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MKKFHSNPQM HLELKDLTEL SDGEMDAQLK VLEFLSHWGL INFHPFPPAV QGMSELFESI  60
TNADTEEKIS VVEKLFQFET VQSYLIPAPN QAELTAPIHT QSLLSEPTLA EDSITQAESS  120
VEYHCNSCSV DCSRKRYHCR TQADFDLCCD CYDKGNLDAG MSQTDFIIME SAEIPGFGGT  180
SWTDQETLLL LEALEIFQAK WGDIAEHVAT KTKAQCMLHF LQMPIMDLFL HDGDVNETSQ  240
ETAEQVSAEL GTSHVTEKKE VEDKAEEIKT NDRKTVAKPK LNLTETEVNL DDNAANNDTK  300
SSGDINVDVC SNTGVSNRSS DTEPTKKETS GENTSNIVND ALKYAFEAVG HIPKIEELGS  360
FTEAGNPVMA LAAFLSGLVD HDDVTTLCCS SLKAISDMSP ALQLATMHCF ILQDPPNDLK  420
DPPVSISFAN TDGGQQKDKD ATSNPSVTDK DDNLKEESAL SVEEPNTTSP SSKNTRKLSN  480
AKESKDESPQ MEPKPSSAND CDNPISQVAK RASDNIRGHS STSLPVSLNN TNEPCFISSQ  540
EATAGNTKDT SHTERIEGDE PIYEDPPLQG KVESNKIEHE VTDLSTVQQH ESIQTSLKKG  600
HIQDHNSIKK IVADDVSIQR LQRAAASAIS AAAVKAKLLA KHEEYQIQRL AALVIDKQLH  660
KMQAKMSVFT EVDNLALRAR EHTERTRKKL LMERSAIIAS RMAALPPRPN HQPGMPGSRL  720
PVGYGVNQHL RRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0639940.0AK063994.1 Oryza sativa Japonica Group cDNA clone:001-124-E10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633469.10.0SWI/SNF complex subunit SWI3D isoform X1
TrEMBLA0A0D3FRX10.0A0A0D3FRX1_9ORYZ; Uncharacterized protein
STRINGOBART04G00520.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45421214