PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G06880.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 234aa    MW: 25127.6 Da    PI: 4.5705
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G06880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.8e-1195135651
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 
                        +Er RR+++N+++  Lr+++P+      +K++Ka+i + A+eYI
  OBART04G06880.1  95 ILMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYI 135
                      579*********************7.....7**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.18989138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1392135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.71E-1193135No hitNo description
PfamPF000104.8E-994135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-1295135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-895149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550215.49E-5155214No hitNo description
CDDcd048739.84E-4156222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDAEMAMGES FAYYWETQRY LESEELDSMY LPTQDDSNYE SSSPDGSHSS SAPAPAAVGG  60
DAAAAVAGSG GGMMTMMMGG GGGGGDDAGG ANKNILMERD RRRKLNEKLY ALRSVVPNIT  120
KMDKASIIKD AIEYIPPAPP VEIQELRVSE VGDRVLVVSV TCSKRRDAMA RVCRALEELR  180
LRVITANITS VAGCLMHTLF VEVDHMDSVQ MKQMVEAALS QLVATGSPLS SMSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0407440.0AB040744.1 Oryza sativa RERJ1 mRNA for Transcription Factor, complete cds.
GenBankAK2422100.0AK242210.1 Oryza sativa Japonica Group cDNA, clone: J075170K16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151185.26e-93DNA binding like
TrEMBLA0A0D3FTY61e-170A0A0D3FTY6_9ORYZ; Uncharacterized protein
STRINGOBART04G06880.11e-171(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-37bHLH family protein