PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G09800.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 784aa    MW: 87639.2 Da    PI: 9.429
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G09800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-07596637240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W  eE ell +a++++++g   +W+ +++ +g+gR+ +++
  OBART04G09800.1 596 KPWGREEIELLRKAIQKYPKGtsrRWEVVSEFIGTGRSVEEI 637
                      68***********************************99876 PP
2Myb_DNA-binding22.33e-07727770344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                      +W++   + lv+a k ++++   +W+++a+ ++ g+t  qck ++
  OBART04G09800.1 727 AWSEAQVLALVQALKAFPKDasqRWERVAAAVP-GKTMVQCKKKF 770
                      7********************************.********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465653.14E-20199298IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1105.2E-20216310IPR001623DnaJ domain
SMARTSM002712.6E-15219294IPR001623DnaJ domain
PfamPF002261.5E-17220299IPR001623DnaJ domain
PROSITE profilePS5007618.045220302IPR001623DnaJ domain
CDDcd062572.52E-13220291IPR001623DnaJ domain
PRINTSPR006254.4E-8225243IPR001623DnaJ domain
PRINTSPR006254.4E-8243258IPR001623DnaJ domain
PRINTSPR006254.4E-8274294IPR001623DnaJ domain
PROSITE patternPS006360279298IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.602.8E-4591637IPR009057Homeodomain-like
PROSITE profilePS512937.219593648IPR017884SANT domain
SMARTSM007171.4E-5594647IPR001005SANT/Myb domain
SuperFamilySSF466898.16E-7596639IPR009057Homeodomain-like
PfamPF002494.3E-6596637IPR001005SANT/Myb domain
CDDcd001679.21E-5597637No hitNo description
PROSITE profilePS512938.965723778IPR017884SANT domain
SMARTSM007172.2E-7724776IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-9725776IPR009057Homeodomain-like
CDDcd001671.32E-5727770No hitNo description
Gene3DG3DSA:1.10.10.608.3E-5727774IPR009057Homeodomain-like
PfamPF002494.0E-6727770IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MSPAQIPRGI SPLSSPLLSN PSRPQASXTA TTPPPPPPPL RRRRAPPPSS PFPPSPSPRF  60
LDGGDPSPPH HLTRRATTSR AGARRLDDEQ DEQAGGRRQP ANQAGREILG EEEQLLLFDR  120
GRSPLIPSAR IDQAISVQEI IDGAPLYVSS NCLPIKACKY EPAGHSFHAA ALKLLGLGEQ  180
EDTETDDRSV SSDDKGQDFS AASDTFSSKG KKKSGSQQQD HYALLGLGHL RFLATEDQIR  240
KSYRDMALKH HPDKQASLIL AEATEEAKQA KKDEIESHFK AIQEAYEVLI DPTKRRIFDS  300
TDEFDDDIPT DCAPQDFYKV FGPAFMRNGR WSVNQTIPSL GDDATPVEEV DKFYNFWWYN  360
FKSWREFPHA DEYDLEQAES REHKRWMERQ NAKLQEKAKK VEYARVRTLV DNAYKKDPRI  420
QRWKEEEKAE KQRRKEAKYL AKKMQEEEAA KAAEEERKRK EEEAKRAAEA ALNQKKLKEK  480
EKKLLRKEKT RLRNLVAPVV AESRFSLSED DVETACSSLD MERLKKLCDS MENKDTTEKA  540
RLLRGALSKE DSSGTSNEGK KIQANGVDGS KAKSTSSGEK VTQGNTLSNY EKKEEKPWGR  600
EEIELLRKAI QKYPKGTSRR WEVVSEFIGT GRSVEEILKA TKTVLLQKPD STKAFDSFLE  660
KRKPAPSIAS PLSVRTETVG LPTEKASGDA SSKAPAQPAS SKTSDEKAPA PAPVSNGTPS  720
GTADPEAWSE AQVLALVQAL KAFPKDASQR WERVAAAVPG KTMVQCKKKF AEMQKNFRSK  780
KGAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A3e-173004212124Zuotin
5dje_B3e-173004212124Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1456477RKRKEEEAKRAAEAALNQKKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8550890.0CR855089.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0135C09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652199.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A0D3FUX40.0A0A0D3FUX4_9ORYZ; Uncharacterized protein
STRINGOBART04G09800.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain