PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G10400.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 91aa    MW: 9880.41 Da    PI: 9.0548
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G10400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.65.2e-163282250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE..-TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif..sstgklyeys 50
                     rie+  +r + f kR++g+ KKAeEL vLCda v  +++  s +++l+ ++
  OBART04G10400.1 32 RIEDRVRRGICFRKRLAGLEKKAEELAVLCDAHVGFVVLscSDDDRLHHFA 82
                     8*********************************87776225788888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.7E-132384IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.0822371IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-162483IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-112545IPR002100Transcription factor, MADS-box
PfamPF003191.2E-183281IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-114560IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-116081IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MAAARGCLAS PGSGASDWEV GMGRRGRVVL RRIEDRVRRG ICFRKRLAGL EKKAEELAVL  60
CDAHVGFVVL SCSDDDRLHH FAAPATYALS P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8550971e-137CR855097.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0075F02, complete sequence.
GenBankCR8551151e-137CR855115.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0148P16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637115.11e-25truncated transcription factor CAULIFLOWER D-like isoform X1
RefseqXP_015637118.11e-25truncated transcription factor CAULIFLOWER D-like isoform X2
RefseqXP_025880634.14e-26MADS-box transcription factor 33-like isoform X3
RefseqXP_025880635.14e-26MADS-box transcription factor 33-like isoform X4
TrEMBLA0A0D3FV423e-58A0A0D3FV42_9ORYZ; Uncharacterized protein
STRINGOBART04G10400.16e-59(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154931117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-10MIKC_MADS family protein