PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART04G11480.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 89aa MW: 10129.2 Da PI: 4.1187

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART04G11480.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	46.8	8.4e-15	1	52	46	97
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +++lp +++ d++sslvyeA+ r+rdPvy +v+ i+ lq+q++ql+ +la OBART04G11480.1 1 MQELPVQQQGDTVSSLVYEANDRMRDPVYDCVRAISFLQNQVSQLQMQLAIG 52 68999*******************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	8.758	1	56	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.9E-13	1	51	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MQELPVQQQG DTVSSLVYEA NDRMRDPVYD CVRAISFLQN QVSQLQMQLA IGQGENLCIL 60 MQHRDGNENE KNNSHEPELN GEVESKPEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR855110	1e-112	CR855110.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0502B11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624534.1	6e-36	LOB domain-containing protein 12
Swissprot	Q8LBW3	1e-24	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A0D3FVH1	2e-58	A0A0D3FVH1_9ORYZ; Uncharacterized protein
STRING	OBART04G11480.1	3e-59	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-27	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]