PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART04G11660.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

S1Fa-like

Protein Properties

Length: 69aa MW: 7712.4 Da PI: 10.7953

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART04G11660.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	131.3	2.6e-41	4	69	6	70
S1FA 6 vea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +e+ kGlnPG ivllvv++ll++f+vgny+ly+yaqk+lPPrkkkPvskkklkreklkqGv++PGe OBART04G11660.1 4 EEVnKGLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKLKREKLKQGVSAPGE 69 5667*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	6.0E-9	1	69	No hit	No description
Pfam	PF04689	1.8E-39	5	69	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence Send to blast
MIIEEVNKGL NPGTIVLLVV ATLLILFFVG NYALYMYAQK TLPPRKKKPV SKKKLKREKL 60 KQGVSAPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK072291	1e-114	AK072291.1 Oryza sativa Japonica Group cDNA clone:J023018N16, full insert sequence.
GenBank	AK289133	1e-114	AK289133.1 Oryza sativa Japonica Group cDNA, clone: J090099A10, full insert sequence.
GenBank	AP014960	1e-114	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	BT129157	1e-114	BT129157.1 Oryza sativa clone RRlibA00156 mRNA sequence.
GenBank	BT130526	1e-114	BT130526.1 Oryza sativa clone RRlibC01181 mRNA sequence.
GenBank	CP012612	1e-114	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633416.1	5e-42	DNA-binding protein S1FA1
Swissprot	P42553	4e-43	S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBL	A0A0E0P8S5	7e-41	A0A0E0P8S5_ORYRU; Uncharacterized protein
STRING	ORUFI04G12850.1	1e-41	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5154	35	63