PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G12880.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 329aa    MW: 34782.3 Da    PI: 8.9815
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G12880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11115158855
                      HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       Er RR+++++ f++L  llPk +     +K +Ka+i+ +A+ YIk L+
  OBART04G12880.1 115 TERERRKKMKNMFSTLHGLLPKiP-----GKTDKASIVGEAIGYIKTLE 158
                      7*********************88.....9****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.884107157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-15111169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-14112168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.46E-11112162No hitNo description
SMARTSM003531.8E-7115163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-9115158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSQEGADLSQ DVDESPYHTA VVTTSNLVRS IKAEKSNSSS SSGKPVETDI GLKVASPTMF  60
GFNTKIEGTG KNMAVKREEG EGGGRPGVSS GVSTQDTNGK GKNAMNMEHA LHIWTERERR  120
KKMKNMFSTL HGLLPKIPGK TDKASIVGEA IGYIKTLEDV VQKLETIKTE RVRAHQWAAA  180
AAAAVAANGG GEGSSHSHSQ PPRHATAVTV AVAEPAPVAA ALNAQAPQKK AAAAAAPTLQ  240
TWSAPNITLT MAGVDAFINM CLPRQRASFT TVAFVLEKHQ IDVVTSTISA DHDKSLFSLN  300
EASLQSTEGL TPEAKYKLAV SELMVRLAE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087280.0AK108728.1 Oryza sativa Japonica Group cDNA clone:002-150-C12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636599.10.0transcription factor bHLH95
TrEMBLA0A0D3FVY60.0A0A0D3FVY6_9ORYZ; Uncharacterized protein
STRINGOBART04G12880.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-22bHLH family protein