PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G14000.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 387aa    MW: 41078.2 Da    PI: 7.3497
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G14000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix29.32.3e-09561192086
         trihelix  20 rlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +l+rg+l+ p+W+ev++++ +++g+ +   s +qCk++++ l+k+yk +++   +       ++++f +l+
  OBART04G14000.1  56 ALGRGSLRHPQWQEVADAVsSREGYAKapkSDVQCKNRIDTLKKKYKIERAKPAS-------SWQFFGRLD 119
                      567999*************87888866222667**************99988876.......488888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-1456121No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDDDDAAASA SPSPSPSPVA SALPVADPVT VAAGPPSGLL ALALPIQKQQ HAAFVALGRG  60
SLRHPQWQEV ADAVSSREGY AKAPKSDVQC KNRIDTLKKK YKIERAKPAS SWQFFGRLDD  120
LLAPTFNQKP GGNGGGGVGA SVNGRNTVPA ALRVGFPQRS RTPLMPAPVS AVKRRAPSPE  180
PSASSESSDG FPPEREPAFP PLPLPPPPNG KRSRADEGRG GGAGGGGDRA QGLRELAQAI  240
RRFGEAYERV ETAKLEQSAE MERRRLDFAS ELESQRVQFF LNTQMELSQV KNHSSSPANA  300
AAPPGATGGA GGTSRRMASV NDDSASGNYH RRYRVSDGGR HRHHPQPPPS RPHYQYHENN  360
IAVAAAAAAS DGEQSDDEED DEEEESQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7315930.0AL731593.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027P08, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCR8551820.0CR855182.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0140O07, complete sequence.
GenBankCT8379700.0CT837970.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104F09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633896.11e-178trihelix transcription factor ASIL2
TrEMBLA0A0D3FWB90.0A0A0D3FWB9_9ORYZ; Uncharacterized protein
STRINGOBART04G14000.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.16e-20sequence-specific DNA binding transcription factors